Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03460 ATGATGAAGCAGTTCGATGTGGTACTTATGAATTTGCTGCAAACTCTACGAAGTAAAGCTGCATCTGGTGACTCTCATCTTAAGTTTGCTGCAGGAAATGACACAGGACCAAATTTGCAAAATATATATGCTCTTGTGCAGTGCACACCTGAGCAAGATTGCAATGATTGCTTGGCTGGTGCTATCTCAGAAATCTCAAGTTCCTGCAATGGCCCCAGAGCTGTAAGAATTGGAAAAAGAAACAGTATCACTGTCATAATCATAGTTGTGGCAGCTGCTGCCCTTGTGGTTCTGTTCATCTTTATATGCGTCTATTTTATGTTGAAGAATCCAAGGAAATATAGTGAAAATCCAACCAATCACACACATTTGAATTGGGAAAGGCGATACAAAGTCATAGAAGGCATTACTCGAGGTCTTCTTTACCTTCATGAGGATTCTAGACTACGAATCATTCATCGTGATCTCAAGCTAAGCAATATTCTCTTAGATCAAGACATGAACCCTAAGATATCTGATTTTGGTACGGCAAGATTGTTTTTGGAGGATCAAACTCAAAGTGATACAAATAGAATTATGGGGATATATAGATATATGGCACCAGAGTATGTGGATCATGGAAATTTCTCTGTGAAATCTGATGTCTTTAGTTTTGGTGTAATGGTTTTAGAGATTGCAAGTGGCAGAAAAATGGTACCGAATCTACTGAGCTTTGTAAGTGCTCTCCTTGACTAA 735 0.3878 MMKQFDVVLMNLLQTLRSKAASGDSHLKFAAGNDTGPNLQNIYALVQCTPEQDCNDCLAGAISEISSSCNGPRAVRIGKRNSITVIIIVVAAAALVVLFIFICVYFMLKNPRKYSENPTNHTHLNWERRYKVIEGITRGLLYLHEDSRLRIIHRDLKLSNILLDQDMNPKISDFGTARLFLEDQTQSDTNRIMGIYRYMAPEYVDHGNFSVKSDVFSFGVMVLEIASGRKMVPNLLSFVSALLD. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03460 244 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 124 231 - -
Seca5g03460 244 Gene3D Transferase(Phosphotransferase) domain 1 84 242 - -
Seca5g03460 244 Pfam Protein kinase domain 120 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03460 244 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Seca5g03460 244 ProSiteProfiles Gnk2-homologous domain profile. 1 91 IPR002902 -
Seca5g03460 244 SMART serkin_6 10 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03460 244 FunFam Os07g0541700 protein 114 195 - -
Seca5g03460 244 ProSiteProfiles Protein kinase domain profile. 1 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03460 244 Pfam Salt stress response/antifungal 3 74 IPR002902 -
Seca5g03460 244 Gene3D - 2 83 IPR038408 -
Seca5g03460 244 SUPERFAMILY Protein kinase-like (PK-like) 115 234 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03460 Seca-Chr5 91343673 91346494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03460 117 230 Receptor kinase-like Gene Family AT4G23230 69.298 2.69e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g03460 Pkinase 1.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03460 - - aprc:113854156 198.364