Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03459 ATGGGTTGGAGATGTAGCTGCGTGGTCTTAGTTGCTCTGCTTCTGCCATTCATGGCTTCTTCAGGTTCCATTATCAAGAACCTGCCAGGGTATAATGGTGATCTTCCATTCAAGCTTGAAACTGGATACATTGGAGTGGGAGAAGGAGAAGAGGTGCAACTATTTTACTATTTTGTGGAGTCTCAAAGAAATCCCTTCCTTGATCCACTTTTACTTTGGTTCGTTGGAGGTCCAGGATGCTCTGCTCTTTCAGCGTTCTTTTTTGAAAATGGACCTTTAACAATGGACGTCAATTATAGTGGGTACCTTCCAAATCTTGAATTGAACCCATATGCATGGACACACATGTTGAATATGATATACCTAGATATGCCAGTGGGCACTGGATTTTCTTACTCAGAAACGCAAGAAGGCTACTATAGCAATGACACATTGTGGGTAGAGCATACATATACATTTTTACAAAAGTGGTTCATTGATCATCCAAAGTTCAGCTCAAATCCATTTTATATTGGTGGCGGCTCATATACAGGATTAGTTACAGGTCCTGTAGTTCAAAAAGTATATGAAGGATACAAAGAAAAACGCGTGCCACGCATTAACATCAAAGGTTATGTGCTTGCAAGCCCAGCTGTTGACGTAAATCGGGAAATGAACATGAGAGTTCTATTTGCATACCATATGTCTCTTATACCAAAAGAACTCTATAAGTCGATGAAAGAAAATTGTAACGATAATTATATAACAATTGATCCAGAAAACACAAAGTGTGTCTCAGATTATGAAGCTTATTCTGAGCTAGTTCGCTATATAAACCGACAACAAATTATGGAGCCTCTTTGTATTACTACGCCTGGTGTGAATCAAGTAATTCAACAATCAGTTCAAGATAGTCCAGAATTTTGGTGTAGAGTTAAGAATATCTCTCTCTTTGAAATATATATGTAG 948 0.3829 MGWRCSCVVLVALLLPFMASSGSIIKNLPGYNGDLPFKLETGYIGVGEGEEVQLFYYFVESQRNPFLDPLLLWFVGGPGCSALSAFFFENGPLTMDVNYSGYLPNLELNPYAWTHMLNMIYLDMPVGTGFSYSETQEGYYSNDTLWVEHTYTFLQKWFIDHPKFSSNPFYIGGGSYTGLVTGPVVQKVYEGYKEKRVPRINIKGYVLASPAVDVNREMNMRVLFAYHMSLIPKELYKSMKENCNDNYITIDPENTKCVSDYEAYSELVRYINRQQIMEPLCITTPGVNQVIQQSVQDSPEFWCRVKNISLFEIYM. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03459 315 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Seca5g03459 315 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Seca5g03459 315 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Seca5g03459 315 Pfam Serine carboxypeptidase 29 303 IPR001563 GO:0004185|GO:0006508
Seca5g03459 315 Gene3D alpha/beta hydrolase 19 291 IPR029058 -
Seca5g03459 315 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 286 IPR001563 GO:0004185|GO:0006508
Seca5g03459 315 SUPERFAMILY alpha/beta-Hydrolases 25 284 IPR029058 -
Seca5g03459 315 FunFam Serine carboxypeptidase-like 19 18 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03459 Seca-Chr5 91326655 91338946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03459 19 48 Calmodulin-binding Proteins AT2G22960 66.667 1.80e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03459 K16296 - gmx:100791997 369.777