Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03450 ATGAATGGGCAAAAAATTAAGCGCCGAGTGGGTAAATATGACATAGGGAGGACCATTGGTGAGGGAACATTTGCAAAAGTGAAATTTGCAAGGAACTCTGAGACTGGGGAGCCTGTGGCTCTTAAGATTCTTGACAAGGAGAAGGTTCTCAAGCATAAGATGGCTGAGCAGATCAGGCGAGAAATAGCTACAATGAAGTTAATCAAGCATCCAAATGTTGTTCAACTACATGAGCACATGATGCAGAATTACATATTTCATTTGCAGGTCATGGGGAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGGGGGGAGCTCTTTGACAAAATTGTAAACCATGGACGGATGGGTGAAAAGGAAGCTCGTAGGTATTTCCAGCAGCTTATAAATGTTGTTGATTATTGCCATAGCAGGGGTGTCTACCACAGAGACCTGAAACCAGAAAACTTGCTATTAGATGTTTGTGGGAACCTTAAAGTTTCTGATTTTGGGTTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTCCATACAACATGCGGGACTCCAAATTATGTTGCTCCTGAGGTCCTTGAGGACAGAGGCTATGATGGAGCAACTGCAGACTTGTGGTCATGTGGTGTGATCCTCTTTGTGTTGCTTGCAGGTTACTTGCCTTTCGATGACTCTAATCTTTTGAACCTGTATAAAAAAATTTCAGCTGCTGACTTTACTTGCCCCCCATGGATTTCTTTTAGTTCCAGGAAATTGATAACTAGAATCTTGGATCCGAATCCCATGACTCGTATCACTATACCTGAGATTTTGCGTGATGAATGGTTTAAGAAAGACTATAAACCTCCAGTTTTTGAGGAGAGAAGGGAGACCAACCTTGATGACATAGAAGCCGTCTTCAAAGATTCTGAAGCACACCTTGTGACAGAGAAGAAGGAACAGCAGCCAACATCTATGAATGCATTTGAATTAATATCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGACATAGACCAGGGATTTAAAAGGGAAACCAGGTTCACATCAAAACGTCCTGCCAATGAGATAATCAACAAGATTGAAGAAGTTGCAAAGCCTCTTGGTTTTGATGTGCAGAAGAAAAATTACAAGATGAAGCTTGAAAATGTGAAAGCTGGAAGGAAGGGAAACCTGAATGTTGCCACTGAGATATTTCAAGTGGCACCTTCTCTTCATGTGGTTGAGGTTCGGAAAGCAAAAGGTGATACATTGGAGTTCCATAAGTTCTACAACAATCTTTCAACATGCCTGGAGGATGTTGTTTGGAAAACCGAAGATGATATGCAAGAAACAAAGTGA 1353 0.4146 MNGQKIKRRVGKYDIGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIRREIATMKLIKHPNVVQLHEHMMQNYIFHLQVMGSKTKIYIVLEFVTGGELFDKIVNHGRMGEKEARRYFQQLINVVDYCHSRGVYHRDLKPENLLLDVCGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLEDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLLNLYKKISAADFTCPPWISFSSRKLITRILDPNPMTRITIPEILRDEWFKKDYKPPVFEERRETNLDDIEAVFKDSEAHLVTEKKEQQPTSMNAFELISMSKGLNLENLFDIDQGFKRETRFTSKRPANEIINKIEEVAKPLGFDVQKKNYKMKLENVKAGRKGNLNVATEIFQVAPSLHVVEVRKAKGDTLEFHKFYNNLSTCLEDVVWKTEDDMQETK. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03450 450 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 430 - -
Seca5g03450 450 Pfam NAF domain 319 378 IPR004041 GO:0007165
Seca5g03450 450 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Seca5g03450 450 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165
Seca5g03450 450 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Seca5g03450 450 ProSiteProfiles Protein kinase domain profile. 13 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03450 450 FunFam Non-specific serine/threonine protein kinase 4 103 - -
Seca5g03450 450 FunFam Non-specific serine/threonine protein kinase 316 441 - -
Seca5g03450 450 Gene3D Phosphorylase Kinase; domain 1 3 103 - -
Seca5g03450 450 SMART serkin_6 13 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03450 450 SUPERFAMILY Protein kinase-like (PK-like) 9 309 IPR011009 -
Seca5g03450 450 Gene3D Kinase associated domain 1, KA1 316 441 - -
Seca5g03450 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Seca5g03450 450 Pfam Protein kinase domain 13 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03450 450 FunFam Non-specific serine/threonine protein kinase 6 320 - -
Seca5g03450 450 CDD STKc_SnRK3 12 278 - -
Seca5g03450 450 CDD CIPK_C 323 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03450 Seca-Chr5 91236020 91242065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03450 4 422 CBL-interacting serine-threonine protein kinases AT2G26980 78.282 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca5g03450 Pkinase 6.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03450 - - pvy:116136070 800.816