Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03449 ATGGGAAACTCTTGTGCAAAACCAGTTGCTCATGTGTCTTCCTCTAATATTGGTGGAAGTAAGAAGCCTCAAAGCAGGTCTCAAAGCAGGCCTCAAAGCAAGCCTCAAAGCAAGTCCCAAAGCAAGCCTCAAAGCAAGCCAAAGCAGTATTCAAATTCTTCTCAACCAAAATCTACTTTGCATCCTTCAAGATTAAATGTTGACCAACCCATCTCCAATAAACTCAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAAGAACTTCCGGCAAGAAAATTTAATTGGAGAGGGAGGATTTGGGCGTATCTTCAAGGGATGGATTGATGAGAACACATTTGCTCCCACAAAACCAGGGAGTGGGATAGTAGTGGCCATTAAGAGTCTTAAACCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGACAGCTTCACCATGAAAATTTGGTGAAACTTATTGGTTATTGCTTGGAAGGTAAAAACAGGCTTCTAGTCTATGAGTATATGCCAAAAGGAAGTTTGGAGAATCATTTATTCAGAATTTTGTTTTCTATTTCTGCAGAAGGTGTTCAGCCCATTGCCTGGGCTACACGTGTCAACATTGCGATTGGCGTTGCAAGAGGATTAGATTTCTTACATTCCCTGCAAGCAAATGTTATATTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCGGATTTCAATGCAAAGCTTTCAGATTTTGGGTTGGCAAGAGATGGTCCTACTGGAGATAATACTCACGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTATACAGCTTTGGTGTTGTCTTGTTAGAGTTACTAACGGGAAGGCGTGCAGTAGAAGATGATAGACCAGGATTTTCAGAGGAAACACTAGTGGATTGGGCAAAGCCCTTTCTGAGTGATAACAGAAGAGTTTTGAGAATCATGGACACTAGGTTGGGTGGACAATACTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTCCAATGCCTTAACTCAGACCCGAAATTTAGACCACCTATGGCAGATGTTCTAGCAGCATTGGAAGGACTTCATTCCTTAAATACAATTCCAAGGACACCAAAATCTGGAACTGAGAGTCATGCAACAAAGCATTCTGGCTATTCACAAAAGTAA 1227 0.4181 MGNSCAKPVAHVSSSNIGGSKKPQSRSQSRPQSKPQSKSQSKPQSKPKQYSNSSQPKSTLHPSRLNVDQPISNKLKSFSLNDLKEATKNFRQENLIGEGGFGRIFKGWIDENTFAPTKPGSGIVVAIKSLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLEGKNRLLVYEYMPKGSLENHLFRILFSISAEGVQPIAWATRVNIAIGVARGLDFLHSLQANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDDRPGFSEETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAQAAAALAFQCLNSDPKFRPPMADVLAALEGLHSLNTIPRTPKSGTESHATKHSGYSQK. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03449 408 Pfam Protein tyrosine and serine/threonine kinase 93 377 IPR001245 GO:0004672|GO:0006468
Seca5g03449 408 CDD STKc_IRAK 96 381 - -
Seca5g03449 408 Gene3D Transferase(Phosphotransferase) domain 1 176 396 - -
Seca5g03449 408 MobiDBLite consensus disorder prediction 8 67 - -
Seca5g03449 408 SMART serkin_6 90 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03449 408 ProSiteProfiles Protein kinase domain profile. 90 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03449 408 SUPERFAMILY Protein kinase-like (PK-like) 57 378 IPR011009 -
Seca5g03449 408 MobiDBLite consensus disorder prediction 386 408 - -
Seca5g03449 408 MobiDBLite consensus disorder prediction 1 67 - -
Seca5g03449 408 MobiDBLite consensus disorder prediction 385 408 - -
Seca5g03449 408 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 176 390 - -
Seca5g03449 408 Gene3D Phosphorylase Kinase; domain 1 65 175 - -
Seca5g03449 408 ProSitePatterns Protein kinases ATP-binding region signature. 96 128 IPR017441 GO:0005524
Seca5g03449 408 PANTHER OS01G0588500 PROTEIN-RELATED 41 382 - -
Seca5g03449 408 FunFam Serine/threonine-protein kinase BIK1 57 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03449 Seca-Chr5 91225567 91228782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03449 68 378 Glycoside Hydrolase AT3G07070 51.111 1.34e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca5g03449 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03449 - - gmx:100800654 588.956