Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03448 ATGTCATTGCAGTTTCCGATAACTGCTATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGAAACAAATATAAAGGCGGCATCTACATGGTCTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGATCGACCTGGGATGAGATTTACAGTCCCCCAAATTAAGTGTTATATGAGGCAGCTTTTGACAGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATAAAAGGCTCAAATCTTCTTATAGATAATGAAGGCAATCTGAAGCTTGCAGATTTTGGATTGGCACGATCATTTTCTAATGAGCACAATGCAAATCTTACAAATCGTGTCATCACCTTATGGTACAGACCCCCTGAGTTACTGCTAGGGACAACAAGGTATGGGCCAGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTGCTGAACTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAACAAGATTTTTGAGCTGTGTGGAGCACCAGATGAGGCGAACTGGCCTGGTGTTTCAAAGACTCCGTGGTATAATCAATTTAAGCCAACAAGACCAATGAAAAGGCGCCTGAGGGACGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTGGAGAAGATGCTGGCACTTGATCCTGCTCAGAGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACTGATCCATTACCATGTGATCCCAAGAGTTTACCCAAGTACGAATCATCGCATGAGTTTCAAACCAAGAAAAAGCGCCAGCAGCAACGACAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAACATCCACAGCAACATACTCGTCTTCCCCCTATTCAGCAGACTGGGCAACAACATGCCCAAATGCGGCAAGGTCCTAACCACCCAATTCATCCCTCTCAACCAGCTGTTGCAGCAGGACCTAGCCATCATTATGGGAAGCCTCGAGGTCCCTCTGGTGGGCCAGGAAGATATCCTCCTGGTGGGAACCCTGGTGGGGGGTACAATCACCCAAATCGTGGAGGTCAAGGAGGGGGTGGTGGTTATGGCAGTGGGCCATATCCTCCTCAAGGGAGGGGGGCACCTTATGGGTCTAGTAGTATGCCTGGTGGGCCTGGTGGTGGTCCTCGTGGTGGAGGTGGTAGTGGCTATGGAGTTGGAGCTCCAAATTATCCTCAAGGTGGTCCATATGGTGGGTCAGCAGCTGGTCGTGGCTCAAACATGATGGGTGGAAACCGTAACCAACAGTATGGTTGGCAGCAGTAA 1383 0.4635 MSLQFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEANWPGVSKTPWYNQFKPTRPMKRRLRDVFRHFDRHALELLEKMLALDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHTRLPPIQQTGQQHAQMRQGPNHPIHPSQPAVAAGPSHHYGKPRGPSGGPGRYPPGGNPGGGYNHPNRGGQGGGGGYGSGPYPPQGRGAPYGSSSMPGGPGGGPRGGGGSGYGVGAPNYPQGGPYGGSAAGRGSNMMGGNRNQQYGWQQ. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03448 460 Pfam Protein kinase domain 8 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03448 460 MobiDBLite consensus disorder prediction 277 306 - -
Seca5g03448 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Seca5g03448 460 Gene3D Transferase(Phosphotransferase) domain 1 62 304 - -
Seca5g03448 460 MobiDBLite consensus disorder prediction 446 460 - -
Seca5g03448 460 MobiDBLite consensus disorder prediction 312 334 - -
Seca5g03448 460 PANTHER CELL DIVISION PROTEIN KINASE 4 270 - -
Seca5g03448 460 SUPERFAMILY Protein kinase-like (PK-like) 4 272 IPR011009 -
Seca5g03448 460 SMART serkin_6 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03448 460 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03448 460 MobiDBLite consensus disorder prediction 275 460 - -
Seca5g03448 460 Gene3D Phosphorylase Kinase; domain 1 2 61 - -
Seca5g03448 460 FunFam Cyclin-dependent kinase C-2 62 304 - -
Seca5g03448 460 CDD STKc_CDK9_like 5 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03448 Seca-Chr5 91220058 91225565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03448 5 460 Core Cell Cycle Gene Families AT5G10270 75.870 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca5g03448 Pkinase 2.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03448 K08819 - gmx:100793565 778.474