Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03444 ATGAGTGGTGAAAGAGGGGGTGATGGCCGCAAAATGACCAAGCGTCGCCGGTCATCATTATCAGGTGAAGAAGCTGGTGGTGGAGATAACTTGGGAGGAGAAGGTCCTCTAAAGAAAGGCCCTGTTGAAGGTGACTTGGGAAGACAAGGTCATCTAAAGAAAGGCCCATGGACATCAACCGAGGATGTAATTTTGATAGACTATGTTAATAAGCATGGAGAGGGAAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGATGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAAACCAGATCTTAAAAAGGGTGCATTCACTCCGGAGGAAGAGAGCCGAATCATTGAGCTCCATGCTAATATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACAAGACTTAAGAGAATGCAACGAGCTGGCTTACCAATCTACCCTGACGAAATATTCCAACGGGTGCTTAATGGCAATCAAGAAAGCCTAAATGCTGGCACCTTGACAAACGAAGCCAGTCAGCATGAAGATCTCCAACAAACAGATAGTTTTGATATACCTGATGTGGAATTTAGAAATTTCAAACTCCGCCGAGGTGTGTTATATGAACCATCAATTTTGGATATGCCTGAAAGCAGCATGCTTGAACAAAATTCAGACTCATCCCATAATTATAGTATGTGGTTGCCAATGATGCCACCCTTAAAGCGCCTCCAGGAGTCAGATATGCTATACAATAGTTTGGACAGTTGTATCAGTAGTGCTGTCCCAGTACTTGATCAGTATGGCAATTATACTTGTAAGAATATTTCCGACCATCCTAATTTGTCTTCTCCATGTGATCCCATTCTTAACACCAGCAAACAGTTTCATGGTGATGACCTCACTGGCAGCCATGCCACTTTAAATGGCAATACCTCTTCTTCTTCTGCCCCCGTATCCGGGGTCATGGAGATGGAGCTCCCTTCACTCCAATATTCACAGACTCAACAAGGTAGCTGGACTGGTCCTGCATCCCCACTTCCTTCACCTGAGTCTGTTGCTACATTGATTCAGTCTCCTCCAATTGAGCCCATTCAGTCAGATCCTGTTTCTCCACAGAGCAGTGGTTTGCTGGAAGCAATATTCTACAACTCAAAGAGTTTGCAAGGCTCAAATATTGGTTCACTGCAAGAGACAACTGATAATTGTGTGCCCACTGAAGCCATCAAGAGTTCAACCTTGATTCCCCATAAGACAGAACGCGATGAACTAGGGGAGCCAAATCCCCCCTTTGGTCAGTCTACTGCTTCAGTTGTGACTGACTATAATCCTTTTAGCACATATTCAGTGGATGGGCTCCAATCAGTGACAAAAACTCAGGATTTTAATCATGAAGCAGTTACAGAGTTCCCAGCTTCCTATTCCAAGAAGAAAGAAATTTTGAATCAGATAGATTTTACTCGGCCCGATGCTTTGCTTGACTTAGGTTGGTTAGGGAACAGCACTGAGTATGGCAAGGATCAAATTCTTCTAAAAGATGCTCTAACTACATTTATTGAAGATTTCCATGTTTAG 1605 0.4374 MSGERGGDGRKMTKRRRSSLSGEEAGGGDNLGGEGPLKKGPVEGDLGRQGHLKKGPWTSTEDVILIDYVNKHGEGNWNAVQKYSGLARCGKSCRLRWANHLKPDLKKGAFTPEEESRIIELHANMGNKWARMAAELPGRTDNEIKNYWNTRLKRMQRAGLPIYPDEIFQRVLNGNQESLNAGTLTNEASQHEDLQQTDSFDIPDVEFRNFKLRRGVLYEPSILDMPESSMLEQNSDSSHNYSMWLPMMPPLKRLQESDMLYNSLDSCISSAVPVLDQYGNYTCKNISDHPNLSSPCDPILNTSKQFHGDDLTGSHATLNGNTSSSSAPVSGVMEMELPSLQYSQTQQGSWTGPASPLPSPESVATLIQSPPIEPIQSDPVSPQSSGLLEAIFYNSKSLQGSNIGSLQETTDNCVPTEAIKSSTLIPHKTERDELGEPNPPFGQSTASVVTDYNPFSTYSVDGLQSVTKTQDFNHEAVTEFPASYSKKKEILNQIDFTRPDALLDLGWLGNSTEYGKDQILLKDALTTFIEDFHV. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03444 534 CDD SANT 56 101 IPR001005 -
Seca5g03444 534 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g03444 534 MobiDBLite consensus disorder prediction 1 54 - -
Seca5g03444 534 SMART sant 106 154 IPR001005 -
Seca5g03444 534 SMART sant 53 103 IPR001005 -
Seca5g03444 534 Gene3D - 109 192 - -
Seca5g03444 534 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Seca5g03444 534 Pfam Myb-like DNA-binding domain 54 101 IPR001005 -
Seca5g03444 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 156 IPR017930 -
Seca5g03444 534 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 519 - -
Seca5g03444 534 ProSiteProfiles Myb-like domain profile. 102 152 IPR001005 -
Seca5g03444 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 101 IPR017930 -
Seca5g03444 534 SUPERFAMILY Homeodomain-like 52 148 IPR009057 -
Seca5g03444 534 ProSiteProfiles Myb-like domain profile. 49 101 IPR001005 -
Seca5g03444 534 FunFam MYB-related transcription factor 53 106 - -
Seca5g03444 534 Gene3D - 51 107 - -
Seca5g03444 534 CDD SANT 109 152 IPR001005 -
Seca5g03444 534 FunFam Transcription factor GAMYB 109 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03444 Seca-Chr5 91113870 91120932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03444 50 531 MYB Transcription Factor Family AT5G06100 39.511 3.49e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g03444 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03444 K09422 - gmx:100800658 676.011