Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03442 GATCACACCTTTCCCTCTTCCTTCTTAATCCCTATCCTGATTTTTAATCTTCAAGATAATAACCCAACCCACCCAACCATCCTCAGTTACAAAACAAACTCTGAAAATCAATCACTTTCAAACAAACCTGAAGCTTCTCTCTCTGGTATCAGTTTTTTGTTTCGTTTCTGTGTTTATGGCCAAAAGTTAATTTCTTGGATGAATCATCAGATGGATAAAATTAAGCATGAAGGTTCAGATCACGACGGAGAAGGAGAAGCCTATGCAGAAGAGGCTGGGAAGAAGATAAAGATATCTCCTTTGAGGTCTTGTGAAGTTGAAGCTGATGAGGCGGTTTCTGTTGAGAACACAGCTCCAAAAACACGTGAGTGCAATATCTGCGGCAAGACTTTCAGCAATGGAAAAGCATTGGGTGGTCACAGAAGATTCCACTTTCAGGAAGCCAGAAAGTATCCACATAAGGTGAAAACCCTATTATTAAAAAAAGTTATTAACAATAGGGCTAGTTCTGATGGGAAACACAAATGTTCAATTTGCAACAAGGAATTCACATCCAAGAACGCCTTGTTTGGTCACATGAGGTCCCACCCTAAGGACAAGAAGGGTCTGTGCCCTCCTAGTTCTTCCTCCCACAATTCTGATTCCTCTGTGGAACAGAATGATAAAGAGGATCAAGATCATGGTAAGGTAGTTGCACCAGATGAACATAGATTCATTGATCTTTCAAAATCTAATCCACCAAGCTGGCAAAAGAAAGATAAAAGAGGAAGAAAATGTATTGGTGGTTATGAAGCTGCTAAAAATCTTATGTACATTTATGCTGAGTTATATTCTTGTCACGATGTTTCCAAGAAGAGGACTAGTACTGCTGTTGAGCCAAAGAGTCCTCAAGTTTCAATCCCAGCTAAGAAAAGGAAGATTATTGGTGAATCATCCTCTAGTGAAGTGAAGAAGATCAAATTCGTTTTTGGTGGTTCATTCAAGTTTGGGGAAAATTCTGAGAGGGATGGTGACTGTGATGATAGTGACAAGCTGAATAGTAAAAAGCATGATGTGAATGAGAGTCCTGGGAAAATTAAGATTGAAGCAGCCAATCCTGGTGCTGAGGTGAAGAAGGTGCGGAAAGGGAAGAAGAGTAAGAAGGACTCAGTGTATGAAAATGAAACTCAAGAGAAATCAGGTGCGTATAAATGTGGTATTTGTAGTAAATCTTTTTCTACTTTCCAAGGCTTAGGGGGACACAGATCAGTTCACAAACAGAAGAACATTGAAACCATGAATGAAGAGAATCAGCCCAACATTGCTGCAGTGGCTGAAGAAATCAATTCTTCTGGTTCTAGCAATGTGCCTAAAGTGGATGAGACTGAGACACCACTGAGTGAAGAAACACTGACACTGACAGATGAGGCTAGTCAGTCTACAGGTCCAACAAAATTGGATTTTGATCTGAATGAGCCATATGTTATGGAGGAGAACTAA 1479 0.4003 DHTFPSSFLIPILIFNLQDNNPTHPTILSYKTNSENQSLSNKPEASLSGISFLFRFCVYGQKLISWMNHQMDKIKHEGSDHDGEGEAYAEEAGKKIKISPLRSCEVEADEAVSVENTAPKTRECNICGKTFSNGKALGGHRRFHFQEARKYPHKVKTLLLKKVINNRASSDGKHKCSICNKEFTSKNALFGHMRSHPKDKKGLCPPSSSSHNSDSSVEQNDKEDQDHGKVVAPDEHRFIDLSKSNPPSWQKKDKRGRKCIGGYEAAKNLMYIYAELYSCHDVSKKRTSTAVEPKSPQVSIPAKKRKIIGESSSSEVKKIKFVFGGSFKFGENSERDGDCDDSDKLNSKKHDVNESPGKIKIEAANPGAEVKKVRKGKKSKKDSVYENETQEKSGAYKCGICSKSFSTFQGLGGHRSVHKQKNIETMNEENQPNIAAVAEEINSSGSSNVPKVDETETPLSEETLTLTDEASQSTGPTKLDFDLNEPYVMEEN. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03442 492 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Seca5g03442 492 Gene3D Classic Zinc Finger 373 452 - -
Seca5g03442 492 MobiDBLite consensus disorder prediction 442 492 - -
Seca5g03442 492 SMART c2h2final6 174 196 IPR013087 -
Seca5g03442 492 SMART c2h2final6 122 144 IPR013087 -
Seca5g03442 492 SMART c2h2final6 396 418 IPR013087 -
Seca5g03442 492 Gene3D Classic Zinc Finger 91 205 - -
Seca5g03442 492 MobiDBLite consensus disorder prediction 442 479 - -
Seca5g03442 492 MobiDBLite consensus disorder prediction 333 355 - -
Seca5g03442 492 MobiDBLite consensus disorder prediction 216 256 - -
Seca5g03442 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Seca5g03442 492 ProSitePatterns Zinc finger C2H2 type domain signature. 398 418 IPR013087 -
Seca5g03442 492 MobiDBLite consensus disorder prediction 368 389 - -
Seca5g03442 492 SUPERFAMILY beta-beta-alpha zinc fingers 172 204 IPR036236 -
Seca5g03442 492 MobiDBLite consensus disorder prediction 190 256 - -
Seca5g03442 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Seca5g03442 492 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 164 491 IPR044653 GO:0003700
Seca5g03442 492 Pfam C2H2-type zinc finger 122 144 - -
Seca5g03442 492 Pfam C2H2-type zinc finger 395 420 - -
Seca5g03442 492 Pfam C2H2-type zinc finger 174 198 - -
Seca5g03442 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 396 423 IPR013087 -
Seca5g03442 492 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Seca5g03442 492 SUPERFAMILY beta-beta-alpha zinc fingers 394 422 IPR036236 -
Seca5g03442 492 SUPERFAMILY beta-beta-alpha zinc fingers 119 148 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03442 Seca-Chr5 90979129 90980701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03442 124 209 C2H2 Transcription Factor Family AT2G26940 37.143 2.33e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca5g03442 zf-C2H2_6 8.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03442 - - aprc:113854137 302.367