Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03437 ATGGCTGTTACCTTCTCAAATCTGAACAACGACTCAGGCCTCAAATCCCTTGACGATTTCCTCTCTGGGAAGGCCTACATTTCTGGGGATCAGTTCACAAAGGATGACATCAAAGTGTATGCTTATGTTTTGGAGAAGCCAGGTGGCACTTTTCCCAATGCTGCTAAGTGGTACGATGTTGTCTCTTCTCATCTTGCTGCAAGGTTTGTACCTTTATCCATAACTGCAAATGGAAGCTTCCCTGGCAATGCTCAAGGAGTAAGATTCAGTGCCAAAGCTGCTGCTCCTGCTGAGGCTGCTCCTGCAGCTGCTTCTGCTGATGATGATGACGACCTTGATCTCTTTGGCGATGAGACAGAGGAGGACAAAAAGGCAGCTGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGATGGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCAGTTCGCAGCATTGAGATGCCTGGTCTATTGTGGGGAGCATGCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACCATTGTTGATGACCTTGTATCGGTGGACACCCTTATTGAGGAGCATCTCACAGTTGAGCCTTGCAACGAGTTTATCCAAAGCTGTGACATTGTTGCATTTAACAAAATTTAA 699 0.4621 MAVTFSNLNNDSGLKSLDDFLSGKAYISGDQFTKDDIKVYAYVLEKPGGTFPNAAKWYDVVSSHLAARFVPLSITANGSFPGNAQGVRFSAKAAAPAEAAPAAASADDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLMDVKPWDDETDMKKLEEAVRSIEMPGLLWGACKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLTVEPCNEFIQSCDIVAFNKI. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03437 232 Gene3D - 136 232 IPR014717 -
Seca5g03437 232 SUPERFAMILY eEF-1beta-like 140 232 IPR036219 -
Seca5g03437 232 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 221 232 IPR001326 GO:0003746|GO:0005853|GO:0006414
Seca5g03437 232 MobiDBLite consensus disorder prediction 120 150 - -
Seca5g03437 232 FunFam Elongation factor 1-beta 1 like 137 232 - -
Seca5g03437 232 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 108 116 IPR001326 GO:0003746|GO:0005853|GO:0006414
Seca5g03437 232 SUPERFAMILY GST C-terminal domain-like 9 66 IPR036282 -
Seca5g03437 232 Pfam EF-1 guanine nucleotide exchange domain 145 232 IPR014038 GO:0003746|GO:0006414
Seca5g03437 232 SMART EF1_GNE_2 143 232 IPR014038 GO:0003746|GO:0006414
Seca5g03437 232 CDD EF1B 141 232 IPR014038 GO:0003746|GO:0006414
Seca5g03437 232 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03437 Seca-Chr5 90886240 90888416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03437 1 232 Eukaryotic Initiation Factors Gene Family AT5G12110 68.201 1.16e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03437 K03232 - gmx:100306132 303.523