Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03436 ATGCAAAGTGGAGCAGCATACTGGTGTTATACATGCAGGCAGCCAATTTGGCTTGCAGGGACAGGGAGGGATGTCCTTTGCCCTTACTGTGATGGAGGTTTTGTGCAAGAACTTAATGAGATGCGAGGAATTGCAGCACCCCAACATGGCTTTTCATCACAGTTGGAAGAGTTTCACCAAATGCCTGATATTTTTGATGCTATACATGCTGTTGTAGGACAAAGAGGTTCTGTACCAAGAATTGGGCTTAGAGATGCTGTTGATAACTATATGAGGCTGAGAATGGCTGGAAGATACCCAAATTTTGATGTTAGAAGGAGGTCTGGTTCTACCCCAGTTCCTGAACAGAATTGGGGCTTTTTTAGTTCTTCTGGTCCTTATTTGATATTTCATGGTCAAGCTCCTGGGTTCACCTTGTCTAATGGTAGCTCAAGAGGTGGTCATAGGCATGTTGATTTTGGCGGCTACTTTATGGGTCCTGGACTGGAAGAAATTGTTCAACTTGCTGTGAATGACCGGCTTGGTCCACCCCCTGCCTCACGTTCTTCAATTGATGCAATGCCTACTATTAAGATCACACAGGCACATCTTTGTGCTGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGATCTTGGTTCTGAGGCTAGGGAGATGCCATGTAACCATATTTACCACTCTGATTGCATTGTTCCTTGGTTAGTTCAACATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACATGCTAGTTCTCGTGGTAGACGAAGTTGGGGAGGAGGAAGAAGGAATGCTAACAGCAGTGGTGGCAATGATATCTCCAGGAGCAGCAGGGATAATAGTCAGCTGAACAATGGAAGAAGAAATCCACTATCATTTATGTGGCCATTCCGTTCTTCCAGTTCAAATACTAGTTAA 927 0.4444 MQSGAAYWCYTCRQPIWLAGTGRDVLCPYCDGGFVQELNEMRGIAAPQHGFSSQLEEFHQMPDIFDAIHAVVGQRGSVPRIGLRDAVDNYMRLRMAGRYPNFDVRRRSGSTPVPEQNWGFFSSSGPYLIFHGQAPGFTLSNGSSRGGHRHVDFGGYFMGPGLEEIVQLAVNDRLGPPPASRSSIDAMPTIKITQAHLCADSHCPVCKERFDLGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGRRSWGGGRRNANSSGGNDISRSSRDNSQLNNGRRNPLSFMWPFRSSSSNTS. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03436 308 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Seca5g03436 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 250 IPR013083 -
Seca5g03436 308 MobiDBLite consensus disorder prediction 247 308 - -
Seca5g03436 308 FunFam E3 ubiquitin-protein ligase RING1-like 167 250 - -
Seca5g03436 308 Pfam Ring finger domain 202 244 IPR001841 -
Seca5g03436 308 CDD RING-H2_RNF126-like 203 244 - -
Seca5g03436 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 248 - -
Seca5g03436 308 SUPERFAMILY RING/U-box 183 250 - -
Seca5g03436 308 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Seca5g03436 308 SMART ring_2 203 243 IPR001841 -
Seca5g03436 308 MobiDBLite consensus disorder prediction 264 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03436 Seca-Chr5 90845306 90846232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03436 163 301 C3H Transcription Factor Family AT1G68180 37.410 4.40e-25 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03436 K11982 - ccaj:109790507 467.233