Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03402 ATGGCTTTCACACTAGACAGGTGTGAGGAGAATATGGTGTTCACTTTTGAGTCTCAGAAGTCAGTGCCAGCACCCTTCCTGACAAAGACATACCAGCTTGTTGATGACCCTAGGACTGATCACATTGTGTCTTGGGGTGAAGATGAAACTACATTTGTTGTATGGAGACCCCCTGAGTTTGCTAGAGATCTTCTTCCAAACTATTTCAAACATAACAACTTCTCAAGCTTTGTTAGGCAACTCAATACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCAAATGAGTTCTTCAAAAAAGGAGCTAAGCATCTTTTATGTGAAATCCATAGGAGAAGAACACCTCAGCATAATCACCAACTCTACCATGATCAACCACAGATTCTTCAGCAAGATGAAAATCTATGTTGGCTTGACAATACTCCATCATTACCATCTCCTAAATCAAGCACAACTGATATTTTAACAGCACTTTCAGAAGATAACCAAAGACTAAGGAGAAAGAACATTATGCTCTTATCAGAACTAAGTCACATGAAGAATTTGTACAATGACATTTTATATTTCATCCAAAACCATGTCAAACCAGCACCCTTTGAACAAAGAAGCAGCAATGCTATTCCAAAGCTGGTGGAATTGGATTCATTGCCTGATTCTCCAACTGATATGGGAGTCAGAACTGCAAAGAGTCATATTATAGAGAAGTCTTTGATAAGTTCTATTGAGGAATCAAATAGTTCTGTGAAACTCTTTGGGGTACCTCTAAGTGGCAAAAAAAGATTGCACCCAGATAACATGAATTGA 813 0.3875 MAFTLDRCEENMVFTFESQKSVPAPFLTKTYQLVDDPRTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEFFKKGAKHLLCEIHRRRTPQHNHQLYHDQPQILQQDENLCWLDNTPSLPSPKSSTTDILTALSEDNQRLRRKNIMLLSELSHMKNLYNDILYFIQNHVKPAPFEQRSSNAIPKLVELDSLPDSPTDMGVRTAKSHIIEKSLISSIEESNSSVKLFGVPLSGKKRLHPDNMN. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03402 270 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g03402 270 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g03402 270 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g03402 270 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Seca5g03402 270 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 207 IPR027725 -
Seca5g03402 270 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g03402 270 Gene3D - 18 116 IPR036388 -
Seca5g03402 270 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g03402 270 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g03402 270 FunFam Heat stress transcription factor B-4 18 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03402 Seca-Chr5 90473302 90474854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03402 10 265 HSF AT1G46264 50.485 7.21e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca5g03402 HSF_DNA-bind 1.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03402 K09419 - gmx:100806150 451.44