Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03398 ATGATGGAAGGAGAGAGTTCAAACAAGAAGAGGGCAAGCTACAATGACTATGGCTTCATGGATTTGATTTTCTCTTGGTCCATTGAAGACATTTTAAATGAAGAACTATACAAGAAAGAGGTAAAGAAGATTAAGCTTTCATTTGAGTCCATAAGTCACTATTTTGGATCTTTTAAGTACCCTTTGTTGGAAGAAACTCGAGCACAATTATGTTCTAGTATGGATCTCATATACCAAGCACCTTTTGCTGAAGTGATTGGTGTTCAGATGGCAAGACCATATGAACAGAAACTGTATCATTTGAAAATTGATGGTTGGAAAAACAGGTTTACTCATCATGGAGAGCCATATAAAATGTTGCCTGGAGACTTGCTAATTTTGGCAGATTATAAACCTGAGACTGTAAAAGATTTGCAGAGATTTGGAAGAATGTGGAGTTTTGTAGTAGTTGTAAGAACAATTGAAGATGATAATGAAGGTGATAGCATGTCTGTCTATTTTAAAGTTAAGGCATCAAAAGATATTGACCACAATGTATTAAGGCAGAAATCTCTTTTCCTTGTTTTCATTACAAATGTAAGTTCTAATGGAAGGATTTGGAACGCACTACACATGACTGGTAATTTAAAGCTGGTCAAGCAAATCTTATGCAACAATGATGGGGTAAGAAACTTAATTTTTAAGTTGTGGGAAAGTTGTAGTTGTGGCTCTCTTGCTGATGCTTCATGGGATGACTCTTCATATGGAAGGTTATCATCTGAGCTTAATGAATCTCAGGATAAGGCCATTCATGCATGTCTTTCTGGCCTGAATTGCAATCACAATGACAACTCTACTGTGAAGCTGATTTGGGGTCCACCAGGAACAGGAAAGACTAAAACTTTGGCAACACTTCTTTGTGCTCTATTGAAAATGAAATATAGAATCCTTGTCTGTGCTCCTACAAATGTTGCTATCAAAGAAGTGGCTTCACGTGTATTGAGCATTGTGAGAGAGTCACTTTGTAGTCAATCAGAGGATTTGTTCTGTTCAATTGGAGACCTGCTATTGTTTGGGAATAATGAAAGGCTCAATGTTGGTTCAGATATTGAAGATATATATTTGGATTATCGAATGCAACAGCTTACACAATGTTTTGCATCTTTTACTGGTTGGAGTTCTTGTCTTGGATCAATGATTGATCTTCTTAAAAATTGTGTTTTCCATTATCATATGTTCATTGGGAATGGGTTGATAAGCTCATATAGTAGCATAAATAAGTCCAAATCATTTCTAGAGTTCATGAGAGAAAGGTTTCTTTCTGCTGTATTGCCACTCAAATCATGTATTTCTGTCTTATGTACACATGTAGGCATGTGTCTCATGTTGGAACATAACTATAAGAACTTAGTGTGCTTAAATGAAGCACTTGAATCATTTCAAGAAGTGTTGTTTCAGAATAATTTGCTTTCTGAAGGATTGGAAAAGCTTTTCTCTAATCTTGAAATACCAGAGAATTCTTCTTGGTCATATAATGATGCTGCATACCAATTGTACATGAAGAGAAATGAATGTCTATCTGCTTTAGTAACTGCAAAAGATTCACTTGATAGACTTGGGTTGATAAAATCTTTGAAGAAAGAATCAATTAGAGAGTTTTGTTTCCAAGCATCATCAATAGTATTTTCCACAACTTCTGGTTCCTATAAGCTACACTCAATTGACATGAAGCCACTGAACCTTTTGGTGATAGATGAAGCTTCACAATTGAAAGAGTGTGAATCAGTAATATCTCTACTACTTCCAGGAATAAGCCATGCCATTCTTGCTGGTGATGAGTGTCAATTACCTTCTATGGTTAGAAGTAATGTTTCTTCTGAAGCTGGTTTTGGGAGAAGCCTATATGAGAGACTGAGCTTATTGAATCATCCAAAGCAACTTCTCAACATGCAGCATAGGATGCATCCTGAAATAAGTTTATTTCCAAATAAATATTTCTATTCTAATAAAATACATGATGCGCCAAATGTCAAAAGTAACTACAGGAAGCAATACCTTCTGGGGCCAATGTTTGCTACATATTCTTTTATTAATATAATTGGGGGCAGAGAAGATTTTGATGATGAAGGAAGAAGCTATAAAAATATGGCTGAGGTAGCAGTCATTGTCACATTAGTGAAGAATTTGCACAAAGAATGGCTTGCCTCAAAGGAGAAACTCTCCATAGGCATAGTGTCTCCCTATGCTGGTCAAGTTATCACAATTCAAGAGAAACTTGGACATATTTATGATAGCTATGATGGATTCAATGTGAATGTTAAATCAATTGATGGTTTTCAGGGTGGCGAACAAGATGTTATTATATTATCAACTGTAAGAACCAATTACAGGAGTTCTCTTGAGTTCATTTCCTCTCCCCAGAGGACTAATGTTGCTCTTACAAGGGCAAGGCATTGTTTATGGATTTTGGGGAATGAAATGGCTCTGTCCAACCGTGACAATGTTTGGAAGGCTTTGATTCTTGATGTGAAGAATCGTAAATGTTTCTTTAATGCGGATGAAGACAAGAAATTGGCAAAAGCTATCTTAGATGCCAAGAAAGAGATGGATCAATCAGTTGATTTGCTTGATGCAAATAGTGTTCTTTTCAGAAATGCTACATGGAAGGTCCACTTCAGTGACAAATTCTTCAGATCATTCAAAAGGCTGAGGACAGAACAGAGGAAAAAGTTGGTTATAGAGGTTTTAAAGAAACTTTCTAATGGGTGGAGACCAAAAAGGACAACTATAGAATTGTATTATGAAAATTCATCACAGATTTTGAAACAATTTAAGGTTGAAAGTCGCTATATTATTTGTTCAATTGAGATAGTTAAAGAGTCAAGGAAGTATATTCAGGTTTTGAAGATATGGGACATATTGCCTCTAGAGGATATCCCACAATTGGCTAAGCGCCTTGATAACACATTCAGAAGATACACTGATGAATATATCATTCGATGCAAACAGAAAGGTTTTGAGGGAAACATTGAGTTTCCTTTGAGTTGGCCTATTTCTTCAAATATCCAAAAATTTAAGAGTGTTGATAATACAAATGAGGGAGTTTTAGATAATTCTGAAGATAGAATTGATGCTGAAAACTCAAAGGTTGAGGAGAGTACATTGTTGATGAAGTACTGTTCCATTTCAAAGAGTTATGTGTTTTCTGGCCATGATGCTTTAGAAGTGGATCTGCCATTTGAGGTAACTGATGAACAGAGAGATATAATCCTCTTCCCTCAAAGTACATTTGTACTTGGAAGGTCTGGCACTGGCAAAACAACTGTTCTGACCACTAAGCTTATTCGAAATGAGAAATTGCACCATCTAGCAGTTGAAGAAGTATATGGATCCAATTATTGTGCAAGTGAGTCTAAGGAGATCATTGCTTCTGATACTGAGAGACCACTCTTAAGACAGTTATTTGTGACATTAAATTCTGGACTGTGTCAACAGGTCAAACATCATGTTTCTTGTTTGAAAAGGTCACTTTGTAAAGGAAGCATGTTAGCTGAAAAAAATTCAATTGATGAAGATATTGGTGATGTTCCAGATTCCTTTTCTGATCTTCCATGCAATTTATATCCCCTTGTGATAACATTTCGTAAATTTTTGCTGATGCTTGATGGGACACTTGGAAATTCTTATTTTGAGAGATTTCATGATCTCAAGGGTCAGAACCTTGGTAAGAAGTTAGTTGCATTGGAAACCTTTAAAATGAAGAAGGAGGTGAATTTTGAAAGGTTTGATTCATTATATTGGCCTCATTTTAATTCCAAGTTAAGTAAGAAGTTGGATTCTTATCAAGTGTTCACTGAAATAATGTCACACATAAAAGGTGGCACAAAATCTGTTGAGCATGGTAAGTTAAGCCGTGAGGAATATTGTACTTTATCTGAAAGCCGAGCATCAAGTTTGAGCATGCAAGCAAGAGAAATGATCTATGATATCTTTCAAGATTATGAAAAAATGAAGATGGATAATGGTGAATTTGATTTGGTTGATATTGTAATTGATTTACACAGTAGACTGAGGACTGAAAGATACAAGGGTGATGAAATGAACTTTGTGTTTATTGATGAAGTGCAAGATCTTACAATGGCTCAAATTGCTTTGTTTAAACACATATGCAGAAATGTAGAAGAGGGTTTTGTTTTCTGTGGGGATACAGCACAGACTATTGGAAGGGGTATTGACTTTAGATTCCAAGATGTAAGACCCCTCTACTACAAGAAGTTTGTGTTAGAAAATTACAAGAATTGGAATCATGACAAAAGAAAGGAGAAAGGGCATTTTAGTGATATCTTCATGTTGAGTCAGAACTTCCGCACTCATGCTGAGGTGTTGAAATTATCACAAAGTATCATTGAACTTTTGTTTCATTTCTTTCCACATTCTATTGACATGTTGAAGGTAGAAACTAGTTTGATATATGGGGAAGCCCCAGTTGTGATAGAATCTAGTAGTACAGAAAATCCACTTGTAACTATTTTTGGAGGACTTGGGAATATTGGAGGATTTGGAGCAGATCAAATAATCTTAGTTCAAGATGATTCTGCTAGGGAAGAAGTCATGCATATTGTAGGAAAACAAGCTCTTGTTTTAACCATTTTAGAGTGCAAGGGCCTTGAATTTCAGGATGTATTGCTGTACAACTTTTTTGCCTCTTCACCTCTGAAAAGGAGATGGTGTGTAATATATGAGTATATGAAGGAAAAAAATATGTTGGACTCAAGAGCACACATTAACAGTAGAAGCTTTTTTGATTCCAAGCACAATGTTTTGTGCTCTGAACTCAAGCAATTATATGTGGCTTTAACACGTACAAGGAAGAGGTTGTGGATTTGTGAGAGTCTAGAAGAGTTCTCTAGACCAATGTTCAACTTTTGGAAGAAGAAAAATCTTGTTCAATTTGAAATACTAAGTAGTTCACTTGTTGAGACAATGAAGAGTGCAAGTAGTAGTGAAGAATGGAGGTCAAGGGGAATTCAGTTGACTACACCTAATGAGAAAAGATGTATCATCAAAATAACTTTGACATGGCAACCATGTGTTTTAAAAGAGCAGGGGATTCTCAGTGGTTGGAAAAGTCTAAGGCTGCGGGTCCCAGAGCAACAACTAATATCATGTATTGAATCCTATGGATGCAAGATTTTGGGGCTTGCATTTTGCTTCATCTTTTACCCAACAAGTTATGCACGTGGATTAAACACCTATCCACTTAACACTCTTGCCCCTAAAATTAAAATTTTACAATTCCTAGCTTGCCATGTACCCAAAACTTATTCAACTCTTTATATAAATAACTTATTTGCATACACCTTGCCATGCATAATCAATCTTCAATTGTACAACATGACTTTTGATGCAATGCTTCTCAGAGAAATTGGTGTTGCATTTTTCATTTTCTTCATCTCATACTTCTCTATTCACTTAATCCTTAGAAGCAATTCTAAAAACCTCCCACCAGGCCCAAGAGGATGGCCAATTCTTGGTGCTCTACCACTCTTAGGAACCATGCCTCATGTCACACTCACAAACATGGCTAAGAAATTTGGACCCATCATGTTCCTAAAAATGGGCACTTGTGACACTGTGGTTGTTTCAAGCCCAGATTCAGCCAGAGCATTCCTCAAGACCTTAAACCAAAACTTCTCAAATAGACCCACAATTGCTGGTGCAACCCATTTGGGGTATAACTCACAGGACCTAGTTTTTGCAGAATATGGGCCTAAATGGAAGCTGCTTAGGAAACTAACCAACCTACACATGTTTGGTGGGAAGGCCCTTCAGGATTGGGCTCATGTGAGAGCAAGTGAGGTAAGACACATGGTGTGGGCCATACATGATGAGTGTGACAAAGGGGAACCAATAGAAGTGGGTGAGTTTTTGAGTTGTGCAATAACAAATATGGTAAGCCAAGTGGTACTAAGCCACCGTATATTTGCAAATAAAGGGTCAGAGTCTAAGGAGTTTAAGGACATGGTGGTGGAATTCATGACAATATCTGGGGTGAATATTGGTGATTTTGTACCTTGCATTGGTTGGATGGACTTGCAAGGTGTGGTGGGTAAGATGAAAAGCTTACATAAGAGATTTGATGTGTTTTTTAATAAGATGATTGATGACCATGTGAAGTCTACTCATGAGCGTAAGGGGAAGCCAGATTTTCTAGATATTGTGATGATGACAAATGGTGAAGATGAAGATCCATCTGGGGAGAAACTGAGTTTGTCTAACATTAAGGCTCTACTATTGTTATCAAATGGAGCAGAGCTAAACATGGATGAGGCCTTTGGACTTACTTTGCAAAAGGCAGTGCCTTTGTCAGCTATAGTTAGCCCTAGATTGGTCCCAGGTGCTTATGTTTGA 6390 0.3681 MMEGESSNKKRASYNDYGFMDLIFSWSIEDILNEELYKKEVKKIKLSFESISHYFGSFKYPLLEETRAQLCSSMDLIYQAPFAEVIGVQMARPYEQKLYHLKIDGWKNRFTHHGEPYKMLPGDLLILADYKPETVKDLQRFGRMWSFVVVVRTIEDDNEGDSMSVYFKVKASKDIDHNVLRQKSLFLVFITNVSSNGRIWNALHMTGNLKLVKQILCNNDGVRNLIFKLWESCSCGSLADASWDDSSYGRLSSELNESQDKAIHACLSGLNCNHNDNSTVKLIWGPPGTGKTKTLATLLCALLKMKYRILVCAPTNVAIKEVASRVLSIVRESLCSQSEDLFCSIGDLLLFGNNERLNVGSDIEDIYLDYRMQQLTQCFASFTGWSSCLGSMIDLLKNCVFHYHMFIGNGLISSYSSINKSKSFLEFMRERFLSAVLPLKSCISVLCTHVGMCLMLEHNYKNLVCLNEALESFQEVLFQNNLLSEGLEKLFSNLEIPENSSWSYNDAAYQLYMKRNECLSALVTAKDSLDRLGLIKSLKKESIREFCFQASSIVFSTTSGSYKLHSIDMKPLNLLVIDEASQLKECESVISLLLPGISHAILAGDECQLPSMVRSNVSSEAGFGRSLYERLSLLNHPKQLLNMQHRMHPEISLFPNKYFYSNKIHDAPNVKSNYRKQYLLGPMFATYSFINIIGGREDFDDEGRSYKNMAEVAVIVTLVKNLHKEWLASKEKLSIGIVSPYAGQVITIQEKLGHIYDSYDGFNVNVKSIDGFQGGEQDVIILSTVRTNYRSSLEFISSPQRTNVALTRARHCLWILGNEMALSNRDNVWKALILDVKNRKCFFNADEDKKLAKAILDAKKEMDQSVDLLDANSVLFRNATWKVHFSDKFFRSFKRLRTEQRKKLVIEVLKKLSNGWRPKRTTIELYYENSSQILKQFKVESRYIICSIEIVKESRKYIQVLKIWDILPLEDIPQLAKRLDNTFRRYTDEYIIRCKQKGFEGNIEFPLSWPISSNIQKFKSVDNTNEGVLDNSEDRIDAENSKVEESTLLMKYCSISKSYVFSGHDALEVDLPFEVTDEQRDIILFPQSTFVLGRSGTGKTTVLTTKLIRNEKLHHLAVEEVYGSNYCASESKEIIASDTERPLLRQLFVTLNSGLCQQVKHHVSCLKRSLCKGSMLAEKNSIDEDIGDVPDSFSDLPCNLYPLVITFRKFLLMLDGTLGNSYFERFHDLKGQNLGKKLVALETFKMKKEVNFERFDSLYWPHFNSKLSKKLDSYQVFTEIMSHIKGGTKSVEHGKLSREEYCTLSESRASSLSMQAREMIYDIFQDYEKMKMDNGEFDLVDIVIDLHSRLRTERYKGDEMNFVFIDEVQDLTMAQIALFKHICRNVEEGFVFCGDTAQTIGRGIDFRFQDVRPLYYKKFVLENYKNWNHDKRKEKGHFSDIFMLSQNFRTHAEVLKLSQSIIELLFHFFPHSIDMLKVETSLIYGEAPVVIESSSTENPLVTIFGGLGNIGGFGADQIILVQDDSAREEVMHIVGKQALVLTILECKGLEFQDVLLYNFFASSPLKRRWCVIYEYMKEKNMLDSRAHINSRSFFDSKHNVLCSELKQLYVALTRTRKRLWICESLEEFSRPMFNFWKKKNLVQFEILSSSLVETMKSASSSEEWRSRGIQLTTPNEKRCIIKITLTWQPCVLKEQGILSGWKSLRLRVPEQQLISCIESYGCKILGLAFCFIFYPTSYARGLNTYPLNTLAPKIKILQFLACHVPKTYSTLYINNLFAYTLPCIINLQLYNMTFDAMLLREIGVAFFIFFISYFSIHLILRSNSKNLPPGPRGWPILGALPLLGTMPHVTLTNMAKKFGPIMFLKMGTCDTVVVSSPDSARAFLKTLNQNFSNRPTIAGATHLGYNSQDLVFAEYGPKWKLLRKLTNLHMFGGKALQDWAHVRASEVRHMVWAIHDECDKGEPIEVGEFLSCAITNMVSQVVLSHRIFANKGSESKEFKDMVVEFMTISGVNIGDFVPCIGWMDLQGVVGKMKSLHKRFDVFFNKMIDDHVKSTHERKGKPDFLDIVMMTNGEDEDPSGEKLSLSNIKALLLLSNGAELNMDEAFGLTLQKAVPLSAIVSPRLVPGAYV. 2130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03398 2129 CDD SF1_C_Upf1 647 833 IPR047187 -
Seca5g03398 2129 Pfam UvrD/REP helicase N-terminal domain 1076 1400 IPR014016 GO:0005524
Seca5g03398 2129 ProSiteProfiles UvrD-like DNA helicase ATP-binding domain profile. 1072 1451 IPR014016 GO:0005524
Seca5g03398 2129 Gene3D - 1445 1646 IPR027417 -
Seca5g03398 2129 Pfam AAA domain 624 819 IPR041679 -
Seca5g03398 2129 Pfam AAA domain 255 615 IPR041677 GO:0004386
Seca5g03398 2129 Pfam Cytochrome P450 1828 2092 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g03398 2129 FunFam P-loop containing nucleoside triphosphate hydrolase 645 852 - -
Seca5g03398 2129 Gene3D - 645 857 IPR027417 -
Seca5g03398 2129 Gene3D Cytochrome P450 1819 2098 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g03398 2129 PANTHER MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 190 1672 IPR039904 -
Seca5g03398 2129 Gene3D - 1082 1422 IPR027417 -
Seca5g03398 2129 Gene3D - 190 644 IPR027417 -
Seca5g03398 2129 SUPERFAMILY Cytochrome P450 1821 2093 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g03398 2129 Pfam UvrD-like helicase C-terminal domain 1531 1622 IPR014017 GO:0005524|GO:0016787
Seca5g03398 2129 Pfam Domain of unknown function (DUF6469) 81 209 IPR045529 -
Seca5g03398 2129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1071 1626 IPR027417 -
Seca5g03398 2129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 833 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03398 Seca-Chr5 90434513 90444151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03398 1796 2092 Cytochrome P450 AT5G07990 42.475 5.69e-71 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03398 - - aprc:113858327 2210.65