Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03397 ATGGGCAACTGTTGCTCCCAAGGCAACGCCGCCGATGCCCCGGCAGCGGCCGACTCCGTTGCCGACAAGGGAGAATCCAATAACCACCATGAATTAGGAGACAATAATGAGCCATCCACCACCACAAACCCTACCACACCACCACCCTCATCAGCCTCACCTCCTCCTCCTCAATCAAAATCCTCCAAACCAGGCGCCGTTGGTCCTGTGCTAGGGAGGCCAATGGAGGATGTGAGAGCAACATACACCATAGGGAAGGAGCTAGGGAGGGGACAATTTGGTGTGACACATTTGTGCACAAATAAGACAACAGGAGAGCAATTTGCATGCAAGACAATTGCAAAGAGGAAGCTTGTGAATAAGGAAGACATAGAGGATGTGAGGAGAGAGGTGCAAATCATGCACCATCTCACAGGTCAACCTAACATTGTGGAACTCAAAGGTGCTTATGAGGATAAACAATCGGTTCATTTGGTTATGGAGTTATGTGCTGGTGGTGAGCTCTTTGATCGCATCATTGCAAAAGGACATTACACTGAACGTGCTGCTGCTTCCTTGTTGAGAACCATAGTGCAGATTGTTCACACTTTCCATTCCATGGGTGTCATTCATAGAGACCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAGAATTCACCCCTCAAGGCCACAGATTTTGGTCTATCTGTCTTTTATAAGCAAGGAGAGACTTTCAAAGACATTGTTGGTAGTGCATATTATATAGCACCTGAGGTCTTGAAGAGAAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATGTGGTGTCCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATTTTAAGAGGTCACATTGACTTCACAAGCGACCCATGGCCTTCAATTTCACCTGCAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAACAGAGACTCACAGCATACGAAGTTCTAATAATAAAATCACATGTAATAATTAATGAAATAATTGTTATGTTAAAAACAGATCATCCTTGGATCAAGGAGGATGGAGAAGCACCAGATAAACCACTTGACAATGCAGTGCTGAATAGGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTCAGGGTCATTGCTGGATGTTTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGAATGGACACTGACAACAGTGGAACCATTACAATTGAAGAACTCAAGCAAGGACTTGCAAAACAAGGGACAAAGCTAACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTACGATGAGTTCATCACAGCAACAATGCACATGAATCGTATGAACAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGATAATAGCGGGTTCATTACTACTGAAGAACTAGAACAAGCTCTCCATGAATTTAACATGCATGATGGTAGAGACATCAATGAAATCCTTAAAGAAGTTGATGGAGATAATGATGGCCGCATTAACTATGATGAGTTTGCGGCAATGATGAGGAAAGGGAATCCAGAAGCTCATACTAAGAAGAGGCGTGATTCATTTGTTTCACATTAA 1668 0.4251 MGNCCSQGNAADAPAAADSVADKGESNNHHELGDNNEPSTTTNPTTPPPSSASPPPPQSKSSKPGAVGPVLGRPMEDVRATYTIGKELGRGQFGVTHLCTNKTTGEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPKQRLTAYEVLIIKSHVIINEIIVMLKTDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALHEFNMHDGRDINEILKEVDGDNDGRINYDEFAAMMRKGNPEAHTKKRRDSFVSH. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03397 555 ProSiteProfiles EF-hand calcium-binding domain profile. 511 542 IPR002048 GO:0005509
Seca5g03397 555 Gene3D Transferase(Phosphotransferase) domain 1 168 345 - -
Seca5g03397 555 MobiDBLite consensus disorder prediction 42 62 - -
Seca5g03397 555 ProSitePatterns Protein kinases ATP-binding region signature. 88 115 IPR017441 GO:0005524
Seca5g03397 555 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Seca5g03397 555 FunFam Calcium-dependent protein kinase 1 84 167 - -
Seca5g03397 555 Pfam Protein kinase domain 82 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03397 555 SMART efh_1 404 432 IPR002048 GO:0005509
Seca5g03397 555 SMART efh_1 440 468 IPR002048 GO:0005509
Seca5g03397 555 SMART efh_1 476 504 IPR002048 GO:0005509
Seca5g03397 555 SMART efh_1 511 539 IPR002048 GO:0005509
Seca5g03397 555 SUPERFAMILY EF-hand 397 537 IPR011992 -
Seca5g03397 555 Pfam EF-hand domain pair 405 465 IPR002048 GO:0005509
Seca5g03397 555 Pfam EF-hand domain pair 474 537 IPR002048 GO:0005509
Seca5g03397 555 ProSiteProfiles Protein kinase domain profile. 82 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03397 555 SMART serkin_6 82 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03397 555 SUPERFAMILY Protein kinase-like (PK-like) 81 336 IPR011009 -
Seca5g03397 555 MobiDBLite consensus disorder prediction 1 74 - -
Seca5g03397 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Seca5g03397 555 FunFam calcium-dependent protein kinase 1 168 364 - -
Seca5g03397 555 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Seca5g03397 555 Gene3D Phosphorylase Kinase; domain 1 83 167 - -
Seca5g03397 555 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Seca5g03397 555 ProSitePatterns EF-hand calcium-binding domain. 520 532 IPR018247 -
Seca5g03397 555 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Seca5g03397 555 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Seca5g03397 555 CDD STKc_CAMK 82 356 - -
Seca5g03397 555 PANTHER SERINE/THREONINE-PROTEIN KINASE 77 532 - -
Seca5g03397 555 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Seca5g03397 555 Gene3D - 346 539 - -
Seca5g03397 555 FunFam Calcium-dependent protein kinase 1 365 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03397 Seca-Chr5 90429472 90434070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03397 1 550 EF-hand Containing Proteins AT5G12180 78.947 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca5g03397 Pkinase 2.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03397 K13412 - gmx:100781355 940.643