Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03393 ATGGAAGAAGTGGATATTTTGCTACAAAACCTGAATGAAAACAATGGCTACTTTCGAAGGTGGTGGAAGCGATATCGTTTATGCAAACTATTGGCAAAGAAAATAGAGAGAATGGAACAGTTAAACGAGAAAAATACATTTGAGCACTTTTCACACCCTGCCCCACTTGCAGAAATTGATGTAGACTATACTTGTGGAGATTTTATATACTTCAATTCTACAAAGGAGGCTGAGCAGAAACTGTTGGATGCCATTAGAGATGACGAGAATGGCTATGTCATTGGATTGTATGGGATGGGAGGGTCAGGAAAAACGTCCTTATCCCTACAAGTAGGAAAGAAAGCAAAGGAAATGAGGATGTTTGATCATGTCATAATTACAACAGTTTCTCAAGAGCCACAGGTCAGAAAGATTCAAGATGAAATTGCAGATCACTTGGAATTGAAATATGAAGAAAGTAGTGATTCTGGAAGGGCAACACGACTATCAATGAGATTGAAGAGTGGGGAACGAATTTTAATAATTTTGGATGATTTTTGGGAAAAGCTTGATTTTAAACAAATAGGCATTCCCAGTGAGGGCAACCACCACAAGGGTTGCAAAGTCCTTTTGACAACGCGTCGCCAACAAGTATGTACCTTGATGGGTTGTGAAACTAACACAATGGTTCCGCTAGACCTTTTATCTGATGAGGAATCTTGGAGTTTGTTCAAAAGGCATGCAGGCATAAGTAATGGTACCTCTGAAGTGGCACGAGAAATTGTTAAAGAATGTAAAGGGCTTCCCATTGCAATTGTAGCTGTGGGAACCTCTTTGAAGGGAAAGCCTGATTATGACTGGAAAGTGGCATTGGACAGGCTGAAGCATTCAAAACCACTTGATGTGGAAACTGGTGTTAGAGATGCATTCGCTTGTCTTCAACTAAGCTATGATTATTTGAAAAATGAGGCAGCCAAATCAATTTTGTTGATGTGCAGTATGTTTCCAGAAGATCACGAGATTGAAGTGGAAGATTTGTTCAGATATGGAATAGGACTCAGAATATTTGAGGAGAAAGTTGACTCATTTGAAATAGCAAGGGAATGGGATTGGTCAAATTTTTCATTTGAAGGTGTGAAACAGCTGAAGGTTGTTGCAATAATTGGGGAGTTTCTGAGATTGCCACAACCAACTAAGTGGTTATCTAATCTTCGAACTTTGCGGTTAGTGAAGATGGAGTTAGGAGACATATCTTTTGTTGTAAGCTTAAAGAGGCAGGAGATTCTGGACTTGAAAAAGAGTAGGATCAAGGAACTTCCTAGTAAAATTGATGAACTGAATAAATTAAGATTATTGGATTTGTCAGAGTGTGAAATTGAAGAGTGTTCGCATATGGAAGAGTTGTACGTTTGTGGTTTTAGTCGTCCAAGTATGAAGTCATATGAAACCTTGGAGAATCTAGTGAAATTGCAAAGCTATGCACTAAATGTCAGCGAATGGCCTAGTGAAATTGCAAATCCATTCTATTATGAATATAGTAATTTTCCTAGGAAAGTTGTATGCATGGAAGAGTTGAATATCTCTACACTAGTTAAAGTTGTCAAGAATCTTCTACAAAGAGCAAAGATGATCTATTTGAAAAGTTTTAAAGGAGGTTGTAAAAGTATCATCCCAAAAATGGTTCAAGTTGTAGGAGGCATGGAGCAGTTGACTGTGCTTGGAGATAGAATGTCTCGTCCATAA 1722 0.3827 MEEVDILLQNLNENNGYFRRWWKRYRLCKLLAKKIERMEQLNEKNTFEHFSHPAPLAEIDVDYTCGDFIYFNSTKEAEQKLLDAIRDDENGYVIGLYGMGGSGKTSLSLQVGKKAKEMRMFDHVIITTVSQEPQVRKIQDEIADHLELKYEESSDSGRATRLSMRLKSGERILIILDDFWEKLDFKQIGIPSEGNHHKGCKVLLTTRRQQVCTLMGCETNTMVPLDLLSDEESWSLFKRHAGISNGTSEVAREIVKECKGLPIAIVAVGTSLKGKPDYDWKVALDRLKHSKPLDVETGVRDAFACLQLSYDYLKNEAAKSILLMCSMFPEDHEIEVEDLFRYGIGLRIFEEKVDSFEIAREWDWSNFSFEGVKQLKVVAIIGEFLRLPQPTKWLSNLRTLRLVKMELGDISFVVSLKRQEILDLKKSRIKELPSKIDELNKLRLLDLSECEIEECSHMEELYVCGFSRPSMKSYETLENLVKLQSYALNVSEWPSEIANPFYYEYSNFPRKVVCMEELNISTLVKVVKNLLQRAKMIYLKSFKGGCKSIIPKMVQVVGGMEQLTVLGDRMSRP. 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03393 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 325 IPR027417 -
Seca5g03393 573 Gene3D - 67 223 IPR027417 -
Seca5g03393 573 FunFam Probable disease resistance protein At1g61300 72 220 - -
Seca5g03393 573 PRINTS Disease resistance protein signature 166 180 - -
Seca5g03393 573 PRINTS Disease resistance protein signature 437 453 - -
Seca5g03393 573 PRINTS Disease resistance protein signature 258 272 - -
Seca5g03393 573 PRINTS Disease resistance protein signature 93 108 - -
Seca5g03393 573 Gene3D Ribonuclease Inhibitor 360 492 IPR032675 -
Seca5g03393 573 Gene3D - 227 314 IPR042197 -
Seca5g03393 573 Pfam NB-ARC domain 80 311 IPR002182 GO:0043531
Seca5g03393 573 SUPERFAMILY L domain-like 385 497 - -
Seca5g03393 573 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 2 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03393 Seca-Chr5 90400010 90402043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03393 94 328 WRKY Transcription Factor Family AT5G45050 27.419 1.79e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03393 - - aprc:113857454 448.358