Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03391 ATGGCATCCACATGTGATGTTTGTGGTTACCGTAACTCTGAGTTGAAACCCGGTGGACGAATTCCTGAAAAAGGAAAAAGGATTACTCTAAGTGTGAAAAATGTTAATGACCTGAGTCGTGATGTAATAAAGTCTGATACTGCGAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGTACCCTGGGAGGAATTGTTACAACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGATAGTCTTGATGAACATAGAAGAAGCAAGTGGTTAGACTTCAAAGCAAGGCTAAACAAGCTTCTTAGCTTGGAAGAAGCTTGGACTCTAATTCTTGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTCAAAGACGACAATCAATTAACATTTGAGGAATATGAGAGGTCATGGGAGCAAAATGAAGAATTAGGTCTGAATGATATGGATACCTCTTGTGCCGATGCTGCTTATGAATCAACAAATACTACTAAAATTGAGTGA 552 0.3931 MASTCDVCGYRNSELKPGGRIPEKGKRITLSVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEHRRSKWLDFKARLNKLLSLEEAWTLILDDALANSFVAPATDDLKDDNQLTFEEYERSWEQNEELGLNDMDTSCADAAYESTNTTKIE. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03391 183 Gene3D ZPR1, A/B domain 20 162 IPR042451 -
Seca5g03391 183 PANTHER ZINC FINGER PROTEIN ZPR1 1 177 IPR040141 -
Seca5g03391 183 SMART zpr1 1 134 IPR004457 GO:0008270
Seca5g03391 183 Pfam ZPR1 zinc-finger domain 1 132 IPR004457 GO:0008270
Seca5g03391 183 NCBIfam ZPR1 zinc finger domain 3 166 IPR004457 GO:0008270
Seca5g03391 183 FunFam Zinc finger protein ZPR1 20 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03391 Seca-Chr5 90369604 90372951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03391 1 182 C2H2 Transcription Factor Family AT5G22480 79.121 1.85e-104 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03391 K06874 - gmx:100798741 344.354