Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03390 ATGCAGATGCTCAATCGACAAGTGGTTAAATCAGAATCTGCTACCATTAAGATACTTGAACTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAAGGGATACTAATGCGGGCTGCTGATGAACTTCAGGCCCTCCAAGAAGAACGCAGAAAAGTGGCTCCAGAGACTGCTGAAGCAATTGATCAGTTCTTGGTCAAATTGCGAGCCTGTGCAACAGGGGATTCATCCTTCATGTTTATTCTTGATGATCCTGCAGGAAACAGCTTCATTGAAAACCCGTTTGCACCGTCATCTAATCCATCCCTAACTATCAAGTTTTATGAGCGAACTCCTGAGCAACAAGCATCATTGGGATATCTTGTTGATTCTACACAAATTGAAGGAACTCGTGATGAAGCACCAGGAGGGGGAGAAGCTGTAGCTGCTAATCAAATGAGAGAACCACATGGGTCAGTAGGGGCAGCAGCTGGTCATCGAGCCATTGCACAGAGTAATAGTGCAGAAATTGCAGAAGCCTTGTTTCGATATACTGCACCAGAAGAGGTGATGACTTTCCCATCAACTTGTGGTGCTTGTGCCAGTCCGTGCGAAACACGAATGTTCGTCACCAGTATCTTTTTACCATTTTGCATATTGCCATTTGAATATGCTTTGCCTGTGTTTGTTACATTTATTTACGATTATCTATCATTTTAG 714 0.4412 MQMLNRQVVKSESATIKILELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERRKVAPETAEAIDQFLVKLRACATGDSSFMFILDDPAGNSFIENPFAPSSNPSLTIKFYERTPEQQASLGYLVDSTQIEGTRDEAPGGGEAVAANQMREPHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACASPCETRMFVTSIFLPFCILPFEYALPVFVTFIYDYLSF. 238
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03390 237 Pfam ZPR1 zinc-finger domain 3 97 IPR004457 GO:0008270
Seca5g03390 237 Gene3D ZPR1, A/B domain 1 125 IPR042451 -
Seca5g03390 237 FunFam zinc finger protein ZPR1 1 125 - -
Seca5g03390 237 Gene3D ZPR1, zinc finger domain 183 222 IPR042452 -
Seca5g03390 237 SMART zpr1 1 98 IPR004457 GO:0008270
Seca5g03390 237 Coils Coil 34 54 - -
Seca5g03390 237 PANTHER ZINC FINGER PROTEIN ZPR1 2 211 IPR040141 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca5g03390 Seca-Chr5 90366167 90368868 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03390 1 211 C2H2 Transcription Factor Family AT5G22480 72.038 1.15e-103 307
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03390 K06874 - gmx:100798741 367.081