Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03375 ATGGCTGAAGAAGGCACAAGATATCCCCTTTTCTATAGCTTCGATGATGAATCCTCTGACCATGACATTCCTTACATTGATGGCAGCGGCATAGGGGGGTCCTCTTTTTACCGACAGCCCATCGTCCCTCCCCATCCCCATCCCCAGGTAGTCGCACTTGCACCAACATCGAAGAAGCCACGTGGAAGGCCCCCAGGTTCAAAGAACAAGCCAAAGCCACCACTTGTGATCAACCAAACAAACGATCAAACCATGAAAGGTGTGGTGATCGAAGTTGGCGTAGGCAAAGACGTGATGGAAACTGTTATTCAGTATGCTCACAGCCACAACGCTGGAATCACAGTGCTTACTGCGTCTGGCTCTATTTCCAACTTGACTCTTTGCCCCCCATTTTCCTATTCTGCTCCTGCTTTTATCCTCCATGGACCTTTTACTTTGTTTGCCCTCAAGGGCTCCTATATAAATTCCCCTTCCCATCCTTCTCATGTTGATGCTTCTAACCCATTATCTTCCTTTATGATTTCCTTTTCAAGCGCTCAAGGCCAAATCTTTAGTGGGATCGTTGGTGGGAAGGTTGTGTCGGCTAATAAGGTGGTCGTGGTAGCCACCTTGCTCAAGAATCCTGAGTTTCAAACGTTTGCTTGTGTCAATGGAAATGAAGGTGAAGAAGGGAATTATAGCCTTAATAATTAA 693 0.4661 MAEEGTRYPLFYSFDDESSDHDIPYIDGSGIGGSSFYRQPIVPPHPHPQVVALAPTSKKPRGRPPGSKNKPKPPLVINQTNDQTMKGVVIEVGVGKDVMETVIQYAHSHNAGITVLTASGSISNLTLCPPFSYSAPAFILHGPFTLFALKGSYINSPSHPSHVDASNPLSSFMISFSSAQGQIFSGIVGGKVVSANKVVVVATLLKNPEFQTFACVNGNEGEEGNYSLNN. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03375 230 Gene3D - 85 215 - -
Seca5g03375 230 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 211 - -
Seca5g03375 230 CDD DUF296 89 190 IPR005175 -
Seca5g03375 230 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 205 IPR005175 -
Seca5g03375 230 ProSiteProfiles PPC domain profile profile. 82 230 IPR005175 -
Seca5g03375 230 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 47 224 IPR014476 GO:0003680
Seca5g03375 230 MobiDBLite consensus disorder prediction 47 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03375 Seca-Chr5 90204367 90205059 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03375 58 213 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.342 4.80e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03375 - - adu:107463674 171.014