Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03373 ATGGCTGAACATGGCATAGGAGTTTCCCTCTCCTCTGATGAGGACTACTCCTCAGACCAACAAACTCCCTACACTGGTGGCAGCGGTGGTGGTGGTGGTTCCTCCTCTCGCCGGCGAACCACACCTCCCTACCTCGAGGCAGGGGATGCCCCTCCACCATCCAAAAAGCCACGTGGCAGACCCCCAGGTTCCAAAAACAAGCCAAAGCCTCCTGTTGTGATCACCCAAGACAATGACAAATCCATGAAACCTGTGGTGATGACAATCGGTGCTGGCAACGATGTGATGGACACTCTCATATCGTTTGCTCGGCGTTGTAACGCTGGAATCACTGTGTTGAGTGGCTCTGGCTCTGTTTCTAAGGTTACCCTTTGCAACCCTTTTTCCCATGCTTCACCTCCTTTCACCCTTCATGGTCCTTTCACTTTGTTGGCCTTGAATGGTACTTTTTTGAACCCACCTATCCCTCATTCCCTTGCTGCTGCTGTTGCTTCTTCTTCTTCGTCATCATCATCCCCTAACCCAGCATCTTCCTTTGGGATTTCCTTCTCTGGTGCCCAAGGTCAGATCTTTGGTGGGGTTGTTGGTGGGAAAATTGTGTCTGGTAATAATGGGGTTGTGCTAGTCACTTCCTTGATTAAGAATCCTGAGGTTCACAGGGTTACTGGTGTGGATGAAGATGATGGGGATGAAGGGGATAACCCTAACAATCAAGGAGGTGCTGCTGCTGGTGGTTCTGCTGCTGCTGTTGGTAGTGACAGCTTGTTCAATCCATTGATGAATTCTCAAGTCCCTTCTGATGCAAATGTGCTGCAATGGGGTCAAACTGCTCCTCGCCATCCTAATTACTGA 852 0.5012 MAEHGIGVSLSSDEDYSSDQQTPYTGGSGGGGGSSSRRRTTPPYLEAGDAPPPSKKPRGRPPGSKNKPKPPVVITQDNDKSMKPVVMTIGAGNDVMDTLISFARRCNAGITVLSGSGSVSKVTLCNPFSHASPPFTLHGPFTLLALNGTFLNPPIPHSLAAAVASSSSSSSSPNPASSFGISFSGAQGQIFGGVVGGKIVSGNNGVVLVTSLIKNPEVHRVTGVDEDDGDEGDNPNNQGGAAAGGSAAAVGSDSLFNPLMNSQVPSDANVLQWGQTAPRHPNY. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03373 283 Gene3D - 82 229 - -
Seca5g03373 283 MobiDBLite consensus disorder prediction 11 41 - -
Seca5g03373 283 MobiDBLite consensus disorder prediction 46 68 - -
Seca5g03373 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Seca5g03373 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 241 IPR014476 GO:0003680
Seca5g03373 283 MobiDBLite consensus disorder prediction 1 80 - -
Seca5g03373 283 ProSiteProfiles PPC domain profile profile. 79 236 IPR005175 -
Seca5g03373 283 CDD DUF296 83 212 IPR005175 -
Seca5g03373 283 MobiDBLite consensus disorder prediction 219 249 - -
Seca5g03373 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 212 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03373 Seca-Chr5 90153849 90154700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03373 55 283 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 38.559 1.93e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03373 - - adu:107463674 189.504