Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03365 ATGGCTGAACAACACATGACATTTTCCCTTTCTCGTAGCTTCGATGATGACTTCTCAAACCAACACACTCCCTATTTCCCTGGTAGCGGTGGAGAGGGGTCCTCCTTTTACTGGCAACCGCCACCCTCCACCATCCCTCCTCCTCCCCACCACCAGGTAGCTCCGCCACCATCGTCTAAGCCACGTGGCAGACCCCCAGGTTCCAAAAACAAGCCAAAGCCACCGCTTGTGATCACCCAAACCAACGAGCAAGACATGAAACCCGTGGTGATCCATGTGGACCCAGGTGTAGACGTGATGGAAGCCATTATTAACTATGCTCACAACTACAACGCCGGAATCATGGTGCTTAGTGGGTCTGGTTCTATTTCCAACTTGACTCTTTCCCACTCTGTTTCCTATTCTCCTTCTTCTTCTTTCACCCTTCATGGACCCTTTACTTTGTTTGCCTTTAGCGGTGCCTGTATAAGTTTCCCTAATTCCCCTCTTGATGGTGCTTCGAATTCCTCATCCAACCCTAACATGTACACATCATCTTCCTTTAGCATTTCGTTTACAAGCGCTCAAGGTAAGATGTATGGTGGGATTGTTGGTGGGAAGGTTGTGTCGTCTAATGATGTGCAGGTGGTGGTTAGCTTGCTCAAGAATCCTGATTTTCATAGGGTTCCTGGTATCAATGAAAATGACGGTGAAGAAGGGTGTAACCCTAATAATTAA 717 0.4784 MAEQHMTFSLSRSFDDDFSNQHTPYFPGSGGEGSSFYWQPPPSTIPPPPHHQVAPPPSSKPRGRPPGSKNKPKPPLVITQTNEQDMKPVVIHVDPGVDVMEAIINYAHNYNAGIMVLSGSGSISNLTLSHSVSYSPSSSFTLHGPFTLFAFSGACISFPNSPLDGASNSSSNPNMYTSSSFSISFTSAQGKMYGGIVGGKVVSSNDVQVVVSLLKNPDFHRVPGINENDGEEGCNPNN. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03365 238 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 214 IPR005175 -
Seca5g03365 238 CDD DUF296 87 211 IPR005175 -
Seca5g03365 238 ProSiteProfiles PPC domain profile profile. 83 237 IPR005175 -
Seca5g03365 238 Gene3D - 86 232 - -
Seca5g03365 238 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 52 230 IPR014476 GO:0003680
Seca5g03365 238 MobiDBLite consensus disorder prediction 1 28 - -
Seca5g03365 238 MobiDBLite consensus disorder prediction 40 72 - -
Seca5g03365 238 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 223 - -
Seca5g03365 238 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03365 Seca-Chr5 90041243 90041959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03365 60 233 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.931 8.94e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03365 - - tpra:123915288 166.007