Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03364 ATGAAACCCGTGGTGATCCATGTGGACCCAGGTGTAGACGTGATGGAAGCCATTATTAACTATGCTCACAACCACAACACCGGAATCATGGTGCTTAGCGGGTCTGGTTCTATTTCCAACTTGACTCTTTCCCACTCTGTTTCCTATTCTCCTTCTTCTTCTTTCACCCTTCAAGGACCCTTTAATTTGTTTGCCTTTAGTGGTGCCTATATAAGTTTCCCTAATTCCCCTCTTGATGGTGCTTCGAATTCCTCATCCAACCCTAACATGTACACATCATCTTCCTTTAGAATCTCCTTTATGAGCGCTCAAAGTAAGATGTATGGTGGGATTGTTGGTGGGAAGGTTCTGTCGGCTAATGATGTGCAGGTGGTAGTTAGCTTGCTCAAGAATCCTAATTTTCATAGGGTTCCTGGTATCAATGAAAATGACGGTAAAGAAGGATATAACCCTAATAATTAA 462 0.4242 MKPVVIHVDPGVDVMEAIINYAHNHNTGIMVLSGSGSISNLTLSHSVSYSPSSSFTLQGPFNLFAFSGAYISFPNSPLDGASNSSSNPNMYTSSSFRISFMSAQSKMYGGIVGGKVLSANDVQVVVSLLKNPNFHRVPGINENDGKEGYNPNN. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03364 153 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 138 - -
Seca5g03364 153 ProSiteProfiles PPC domain profile profile. 1 152 IPR005175 -
Seca5g03364 153 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 145 IPR014476 GO:0003680
Seca5g03364 153 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 129 IPR005175 -
Seca5g03364 153 Gene3D - 2 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03364 Seca-Chr5 90019649 90020110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03364 1 151 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.484 2.10e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03364 - - csav:115720932 113.235