Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03363 ATGAAACCCGTGGTGATCCATGTGGACCCAGGTGTAGACGTGATGGAAGCCATTATTAACTATGCTCACAACCACAATGCCGGAATCATGGTGCTTAGTAGGTCTGGTTCTATTTTCAGCTTGACTCTTTCCCACCCTGTTTCCTATTCTCCTTCTTCTGCTTTCACCCTTTATGGACCCTTTACTTTGTTTGCCTTTAGTCGTGCCTATATAAGTTTCCCTAATTCCCCTCTTGATGGTGCTTCGAATTCCTCATCCAACCCTAACATGTACACATCATCTTCCTTTAGCATTTCCTTTACGAGCGCTCAAGGTAAGATGTATAGTGGGAAGGTTGTGTCGTCTAATGATGTGCAGGTGGTGGTTAGCTTGCTGAAGAATCCTGATTTTCATAGGGTTCCTGGTATCAATGAAAATGACGGTGAAGAAGGGTATAACCCTAATAATTAA 450 0.4311 MKPVVIHVDPGVDVMEAIINYAHNHNAGIMVLSRSGSIFSLTLSHPVSYSPSSAFTLYGPFTLFAFSRAYISFPNSPLDGASNSSSNPNMYTSSSFSISFTSAQGKMYSGKVVSSNDVQVVVSLLKNPDFHRVPGINENDGEEGYNPNN. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03363 149 Gene3D - 1 146 - -
Seca5g03363 149 ProSiteProfiles PPC domain profile profile. 1 148 IPR005175 -
Seca5g03363 149 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 142 IPR014476 GO:0003680
Seca5g03363 149 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 134 - -
Seca5g03363 149 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 123 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03363 Seca-Chr5 90004647 90005096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03363 1 147 AT-hook Motif Nuclear Localized (AHL) Family AT1G14490 29.299 1.50e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03363 - K16791 pop:7463887 114.39