Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03361 ATGTCTTCTTCACTCGTGAAGATCCAAGACGAACAGGTCCTCGCCAACGATCTTCAGGATCTTTCAATCAAAGATCTGGATATTGTTGATGTTCAGAGGGAAAAGGGGAGTGAAGAAGAGGGATTTGGAAACCATGGGGGAATCTGTGCTATTTGCTTGGATAAGATAGTGCTACAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGTAACATGCATCCTTCGCTGGGCCACGTACAGTCAGAACGTTACCTGCCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTCCATCGTTCTCTTGATGGCAGCATTCAAGATTACATGTTTGAGGAAAGTGTCTGCCTGCTACTTCGGGCCCAGTGGTTCAAACCGATAACTATTGTTGAAGACCATGTGGTTCATGAAGATACCTATGATGAAATTGAAGACTATTATCAGTATGAGGAGGAAGATGATGATCTAGATGATGAAGTTTACTATGGAGGCTCATCGAGTTTTCGCATTGGCAACCGTAGATGGGGAGACAATGGTTATGTTAGGGCTGGGCGTCAAGAAGCTCGGCCAGTTCAGCGATCAAACTTCCATGATTCAGGAGCAAGTTCATCCCGTGAACCAAAGAAAAAAGAGGCTGCAAAAAGTACAACAGGGAGACGAGCAAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCAGCTGAAGCAAAGCATCAACAGCATTTGCTAAGGTTGGGTAGGAAGTGA 753 0.4529 MSSSLVKIQDEQVLANDLQDLSIKDLDIVDVQREKGSEEEGFGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYSQNVTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRAQWFKPITIVEDHVVHEDTYDEIEDYYQYEEEDDDLDDEVYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVQRSNFHDSGASSSREPKKKEAAKSTTGRRAKRALKREAADKAAEAKHQQHLLRLGRK. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03361 250 ProSitePatterns Zinc finger RING-type signature. 67 76 IPR017907 -
Seca5g03361 250 CDD RING-HC_Topors 49 95 - -
Seca5g03361 250 MobiDBLite consensus disorder prediction 186 250 - -
Seca5g03361 250 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 250 - -
Seca5g03361 250 ProSiteProfiles Zinc finger RING-type profile. 49 92 IPR001841 -
Seca5g03361 250 Pfam Ring finger domain 49 92 IPR001841 -
Seca5g03361 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 96 IPR013083 -
Seca5g03361 250 SMART ring_2 49 91 IPR001841 -
Seca5g03361 250 MobiDBLite consensus disorder prediction 204 243 - -
Seca5g03361 250 SUPERFAMILY RING/U-box 24 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03361 Seca-Chr5 89974988 89979554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03361 3 250 C3H Transcription Factor Family AT5G19430 59.302 5.55e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03361 - - gmx:100777135 348.977