Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03359 ATGTGGCCGGTCGCTTCTTCCAGGCCAATCAACTACGGCCACGTGGCACAGGACATGGTTGGTCTTCGTGACGTGTTCCTGGTAGCACCTGCTTCCTCTTTCCACCACCACCACCATCACAACCACAACGAAACCCTCATAACCGAATCTCACTCTTTAAACGGTTCAAATCCTGCAACTGCACTTGGCGTCGGTGTGATCCCTCTGTTAGGAGGCGGAATTCAGTTATGGCAGGAACAACAGCACCAACAGAATCAGCAACAAACTCACTATTTGAAGAAGCATGCTCTTGTGGAACACAATGATAGTGGTGGAATAACTGCTTTGGTTTCCAATAGTGGAGGTGGTGGAACGACGACGTGTCAAGATTGTGGGAATCAAGCGAAGAAAGATTGTAGTCATAGAAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTTGATTGCGCCACTCACGTGAAGAGCACGTGGGTTCCCGCTGCACGGCGGAGGGAACGGCAGCTCATGGCGGAGACGGCAGCCGTTGCTGGTGGCTCTACCGGTTCTACAGGTCATGCTAAGAAACCAAGGCTTGTTGCTTCTCAGACCACAACAACTTCTCATACTTCCACTTCTAACACCACTCCCCCTAGGAGCTTTGACACTAGCTCTAGCCATCAAGATGCGAGTTTCAAGGAGACGATGCCTTGTCAAGTACGTGCACCGGCTGTGTTCAAGTGTGTGAGAGTGACGGCAATGGAAGATGGGGAAGATGAGTTTGCGTATCAGGCTACTGTGAAGATTGGTGGCCATGTGTTTAACGGGCTTCTTTATGATAAAGGGGTTGAGGATAAAGATGGTTATCCTAATTTATCTGAACTGCATTTGGGTGGTGGTGGTAGTGGAAATGTTGGAAGTGGTGGTGGTGGTGGTAGAAACGGGGTTTCATCTTCATCTCCAATGATGGATCCATCTGATGTTTATGCAGCTTCAGGTAGTGGGGGGTTTCTTGGAGGTTCATCAACCTATGGTAATCCAATAAATTAA 1023 0.4917 MWPVASSRPINYGHVAQDMVGLRDVFLVAPASSFHHHHHHNHNETLITESHSLNGSNPATALGVGVIPLLGGGIQLWQEQQHQQNQQQTHYLKKHALVEHNDSGGITALVSNSGGGGTTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAETAAVAGGSTGSTGHAKKPRLVASQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKETMPCQVRAPAVFKCVRVTAMEDGEDEFAYQATVKIGGHVFNGLLYDKGVEDKDGYPNLSELHLGGGGSGNVGSGGGGGRNGVSSSSPMMDPSDVYAASGSGGFLGGSSTYGNPIN. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03359 340 MobiDBLite consensus disorder prediction 188 224 - -
Seca5g03359 340 Pfam Domain of unknown function (DUF702) 118 275 - -
Seca5g03359 340 NCBIfam putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Seca5g03359 340 MobiDBLite consensus disorder prediction 291 318 - -
Seca5g03359 340 MobiDBLite consensus disorder prediction 173 225 - -
Seca5g03359 340 MobiDBLite consensus disorder prediction 302 316 - -
Seca5g03359 340 NCBIfam LRP1 C-terminal domain 227 274 IPR006511 -
Seca5g03359 340 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 33 323 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03359 Seca-Chr5 89956036 89957814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03359 2 319 C2H2 Transcription Factor Family AT5G12330 50.877 1.73e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca5g03359 DUF702 1.1e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03359 - - lja:Lj6g3v0959410.1 429.869