Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03356 ATGGAAGATTCAATTGAGTTGAAATCAGAAGAAAATAAAATCTCTATGGAGAAAAATAACAAAAGAAGGCTCAAAACACCTGCTCAGCTTATGGCCTTGGAAAATTTTTATAATGAGCACAAATATCCCACAGAGGAAATGAAATTAGAACTTGCTGAAGAGTTAGCATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAGTATGTGTTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGAGGCAGTGGACTAGGGCAAGATTCATGTGGAAGCACCAAACATGGTGATAATAGGTATCTGGATCCCAAAGAGGTCGAGAGCCATGGTCTCCATAACCATGAATTTTCAGTTGCAGATATGGCCTATGGACATAGGAACCATTTTCCAGAAGATGATAGTGCAACAGATAACACATCATCTGAGAGTAGTTCATCTTTGCAAGAACGATTGTTACCTCAAGGACAGGATCCATTTGATATGGAGCCTTCTAGGTATCTAACACCCAATGGAGCTCTTCCACCTCTAAATCCCAAGAGTGCAATTAACATGGGATATAAACCATCAGGATATCTAAAAGTGAAAGGGGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCGATTGGGAAGGCATTATCAGGAAGATGGTCCACTACTTAGTGTGGAATTTGATACAATTCCACCAGGGTCATTTGAATGTCAAACTGCAGATCCAGTTAATGGTAGGTTGTACTATATGAATTCATTTATCCTATTTTTTGAAGTCTCATTCAATTTGCACTAA 837 0.3859 MEDSIELKSEENKISMEKNNKRRLKTPAQLMALENFYNEHKYPTEEMKLELAEELALTEKQISGWFCHRRLKDKRLLKDEVCVNGRQDRSSGVIQDRGSGLGQDSCGSTKHGDNRYLDPKEVESHGLHNHEFSVADMAYGHRNHFPEDDSATDNTSSESSSSLQERLLPQGQDPFDMEPSRYLTPNGALPPLNPKSAINMGYKPSGYLKVKGEIEHAAITAVKKRLGRHYQEDGPLLSVEFDTIPPGSFECQTADPVNGRLYYMNSFILFFEVSFNLH. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03356 278 MobiDBLite consensus disorder prediction 90 119 - -
Seca5g03356 278 CDD homeodomain 21 75 IPR001356 GO:0003677
Seca5g03356 278 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Seca5g03356 278 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Seca5g03356 278 SMART HOX_1 18 80 IPR001356 GO:0003677
Seca5g03356 278 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 265 - -
Seca5g03356 278 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g03356 278 MobiDBLite consensus disorder prediction 152 168 - -
Seca5g03356 278 MobiDBLite consensus disorder prediction 141 181 - -
Seca5g03356 278 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Seca5g03356 278 Gene3D - 8 90 - -
Seca5g03356 278 MobiDBLite consensus disorder prediction 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03356 Seca-Chr5 89813890 89821412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03356 3 265 Homeobox Transcription Factor Family AT4G03250 54.545 5.40e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca5g03356 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03356 - - gmx:100803515 416.772