Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03351 ATGTCTGATATTGACATAAATTTGCCAACAATAGTTTTTGAGCAAGAGGTGTTGTATAAGGAGTGTAGGCACAACCCTGTAGCAAAACTCGGTCGTGTTTCCCATGATGGATGCCCAGAGTTTCTCCAAGACACCGCTAATGATGCTATGCTGTGTGCTGCTTGTGGGTGTCACCGAAGCTTTCACCGTAAACAAATTGTCTACAAACCCATAGACATACCCCAAATTGCAGACAATAATATGACTGCAACAAGGTCGTCACCTGTGGGCCCGGTTGTGCAATTCAACCCCCCAGGCCCAGAGCCACCAAAGACGAGGAAGAGAACAAGGTTCACACCGGAGCAAAAGAATCGAATGATGAGTTTTGCTGAGAGGTTTGAGTGGAAACCTCAAAGGGCAAACAAGGAAGAAATCCAACATTTCTGCTTAGAGATGGGAATCACTCACAAAATATTCATGGTCTGGCTCCGCAACAACTGTCATCGAGCAACACACAAGAATTAA 504 0.4524 MSDIDINLPTIVFEQEVLYKECRHNPVAKLGRVSHDGCPEFLQDTANDAMLCAACGCHRSFHRKQIVYKPIDIPQIADNNMTATRSSPVGPVVQFNPPGPEPPKTRKRTRFTPEQKNRMMSFAERFEWKPQRANKEEIQHFCLEMGITHKIFMVWLRNNCHRATHKN. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03351 167 SUPERFAMILY Homeodomain-like 98 162 IPR009057 -
Seca5g03351 167 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca5g03351 167 NCBIfam homeobox domain, ZF-HD class 104 159 IPR006455 -
Seca5g03351 167 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Seca5g03351 167 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 65 IPR006456 -
Seca5g03351 167 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 161 - -
Seca5g03351 167 Gene3D - 96 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03351 Seca-Chr5 89777356 89777859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03351 10 159 ZF-HD Transcription Factor Family AT1G69600 32.984 3.29e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g03351 ZF-HD_dimer 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03351 - - pcin:129285637 150.599