Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03350 ATGTCACGGACTGATGCGATGATGATGATGACTTCCGATCCTAACAGAAGTGGTCCTGTAGAAAGAGACATTGAGCAGGCTATTACTGCTTTAAAGAAAGGGGCTTACTTGCTGAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAATGATGAATCTGTATTGATATGGTTCTCAGGAAAAGAAGAGAAGCGCCTTAAACTAGCTAATGTTTCTAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATATCAGTCATTTTCTCTTATCTACAATGATAGATCACTGGACTTGATTTGCAAGGATAAAGATGAAGCTGAGGTTTGGTTTAGTGGATTAAAAGCACTGATTTCGCGCAGTCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGAAGCTAATAGTCCTCGAACATACACCAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGTAGTAATGAAAGCTTGCAGAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCTGATGTGATGTACTATCCTATTCCTCCAAAGGGTTTCTTCCCTCCAGATTCCGCCAGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGTATGCATGGCCACATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAATGCACAGGTGATGGTGTTCTGGGTGGTGGACCTCACCGAGTTGGGAGTTGTCTTGATGTCAAAATGGATTCTCTATTGCCCAAAGCCTTGGAATCGGCAGTGGTTCTTGATGTGCAGAATATTGCTTGCGGTGGGCAACATGCGGCCTTAGTGACCAAACAAGGTGAGATTTTCTCCTGGGGGGAAGAATCAGGAGGCAGGCTTGGGCATGGAGTTGATTCTGATGTTCTTCATCCAAAGCTTATTGAATCTCTAAGTAATACGAATATCGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTCACATTTATGGTCTTTTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAGGGCATACACGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCAAGGGAAATAGAGTCCCTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCCAAACTTGTTCCAACCTGTGTTGTAGCCCTTATTGAACCTAACTTCTGTCAAGTTGCTTGTGGTCATAGTATGACAGTTGCACTTTCTAGATCAGGCCATGTCTATACCATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACTCGTGTTGAAGGAAAGCTTTCAAAGAGTTATGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCGGTTTTAACTTCAAGGACGGAAGTTTACACTTGGGGGAAGGGTGCAAATGGACGTTTAGGCCATGGGGATACTGATGATAGAAACTCCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATCGCTTGTGGTACAAATTTCACTGCAGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTCTGCCATTTAATTTCAAAAGGAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTATTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAGTTGTTTTAATAAAATAAGGAAAACTACAGAAACTGATTCTTCATCTCAGTCTTCTATGAGCAGAAGAGGAAGTATTAATCAGGGTTCACTTGAGTTTAATGGCAAGGATGAGAAATTGGATTCCAAATCTCGTAATCAACTTGCCAGGTTCGCTTCAATGGAATCCTTGAAACAAGTGGATAGAAGATCTTCAAAGAAAAATAAGAAATTGGAGTTCAACAGTAGCCGTGTCTCGCCTGTTCCAAATGGAGGTTCACAATCAGGAACAATGAATATTTCTAAATCTTTTAATCCTGTCTTCGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCGATATCTAGGCGGCCTAGTCCACCTCGTTCAACTACTCCAACCCCAACGCTGGGAGGACTTACATCCCCAAGGATGGTTGTGGATGATGCTAAGAGGACCAATGATAGCCTCAGTCAGGAGGTTGTTAAATTAAGATCACAGGTGGAAACCTTGACTCGGAAAGCACAACTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTAAAAGAAGCAATAGCAATTGCCAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGACTTCCTGTAGGAGCAGCCAGGAATGTCAGATCCCCCACTATTACTTCGTTTGGCTCCAATCCTGGTTCCAATGACGTGAGTAATGCATCCGTTGAACGATTGAATATTCAAACAAGAAGCCCAGAATCAGACTTAACTGGATCTAATGACCAGTTGCTTTCAAATGGATCAAGCACTATCACTAACCGTAGTGCAGCTCACAGTAAACATGGTCAATCAGATGCATCTAGCAGAAATGGATGCAAAACAAAGGATAACGAGTCACGTAATGAGACCGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGATGTAATAGATCTTAAGAGAGTTCGCTTTAGTCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGCGAGAGTATATGAACAGTACAACGTGCGAATGATTGACAAGTCGACCATTGGTGTTGGGAGTGAGGACTTGACTCATTGA 3336 0.4382 MSRTDAMMMMTSDPNRSGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLANVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGFPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVMYYPIPPKGFFPPDSASGSVHSVSSGGSDSMHGHMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGECTGDGVLGGGPHRVGSCLDVKMDSLLPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTHIYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVVALIEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNPQADGKLPTRVEGKLSKSYVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSIKASMAPNPNKPYRVCDSCFNKIRKTTETDSSSQSSMSRRGSINQGSLEFNGKDEKLDSKSRNQLARFASMESLKQVDRRSSKKNKKLEFNSSRVSPVPNGGSQSGTMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPRMVVDDAKRTNDSLSQEVVKLRSQVETLTRKAQLQEIELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVRSPTITSFGSNPGSNDVSNASVERLNIQTRSPESDLTGSNDQLLSNGSSTITNRSAAHSKHGQSDASSRNGCKTKDNESRNETEWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTIGVGSEDLTH. 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03350 1111 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 319 329 IPR000408 -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 984 1041 - -
Seca5g03350 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 384 IPR000408 -
Seca5g03350 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 332 IPR000408 -
Seca5g03350 1111 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 664 726 IPR017455 -
Seca5g03350 1111 Coils Coil 870 911 - -
Seca5g03350 1111 CDD FYVE_like_SF 669 722 - -
Seca5g03350 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Seca5g03350 1111 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
Seca5g03350 1111 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 67 945 - -
Seca5g03350 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 146 176 - -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 141 195 - -
Seca5g03350 1111 FunFam PH, RCC1 and FYVE domains-containing protein 1 242 493 - -
Seca5g03350 1111 SUPERFAMILY PH domain-like 23 131 - -
Seca5g03350 1111 Pfam Transcription factor BRX N-terminal domain 921 953 IPR027988 -
Seca5g03350 1111 Pfam Transcription factor regulating root and shoot growth via Pin3 1037 1092 IPR013591 -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 984 1025 - -
Seca5g03350 1111 Gene3D - 23 140 IPR011993 -
Seca5g03350 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Seca5g03350 1111 SUPERFAMILY FYVE/PHD zinc finger 660 731 IPR011011 -
Seca5g03350 1111 FunFam PH, RCC1 and FYVE domains-containing protein 1 494 665 - -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 838 868 - -
Seca5g03350 1111 CDD PH_PLC_plant-like 22 132 - -
Seca5g03350 1111 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 426 436 IPR000408 -
Seca5g03350 1111 Pfam FYVE zinc finger 660 726 IPR000306 GO:0046872
Seca5g03350 1111 SMART fyve_4 658 727 IPR000306 GO:0046872
Seca5g03350 1111 Gene3D - 499 671 IPR009091 -
Seca5g03350 1111 Gene3D - 249 498 IPR009091 -
Seca5g03350 1111 Pfam Pleckstrin homology domain 25 131 IPR001849 -
Seca5g03350 1111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 672 733 IPR013083 -
Seca5g03350 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 608 659 IPR000408 -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 775 792 - -
Seca5g03350 1111 Coils Coil 919 946 - -
Seca5g03350 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 439 IPR000408 -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 1026 1041 - -
Seca5g03350 1111 Pfam Unstructured region between BRX_N and BRX domain 962 1031 - -
Seca5g03350 1111 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 478 488 IPR000408 -
Seca5g03350 1111 FunFam Putative E3 ubiquitin-protein ligase HERC1 666 734 - -
Seca5g03350 1111 PRINTS Chromosome condensation regulator RCC1 signature 545 563 IPR000408 -
Seca5g03350 1111 PRINTS Chromosome condensation regulator RCC1 signature 385 401 IPR000408 -
Seca5g03350 1111 PRINTS Chromosome condensation regulator RCC1 signature 316 329 IPR000408 -
Seca5g03350 1111 PRINTS Chromosome condensation regulator RCC1 signature 426 442 IPR000408 -
Seca5g03350 1111 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Seca5g03350 1111 PRINTS Chromosome condensation regulator RCC1 signature 442 456 IPR000408 -
Seca5g03350 1111 PRINTS Chromosome condensation regulator RCC1 signature 603 624 IPR000408 -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 729 810 - -
Seca5g03350 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 384 436 IPR000408 -
Seca5g03350 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 555 604 IPR000408 -
Seca5g03350 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Seca5g03350 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 333 381 IPR000408 -
Seca5g03350 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 440 488 IPR000408 -
Seca5g03350 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 609 656 IPR000408 -
Seca5g03350 1111 SUPERFAMILY RCC1/BLIP-II 270 661 IPR009091 -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 729 751 - -
Seca5g03350 1111 MobiDBLite consensus disorder prediction 793 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03350 Seca-Chr5 89748205 89759448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03350 930 1102 Major Intrinsic Protein MIP AT1G31880 32.787 1.95e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03350 - - gmx:100791947 1956.03