Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03341 ATGTATAATTCCTATACTCTGCAGTCTAAACCCTTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGTGATACTGTTGGATTAACAGCCACTGGTGAGGTCTTTGTTGCTTGCCATGAGTGTGCCTTCCCACTTTGTCATCCTTGTTATGAATATGAGCAAAAGAATATGAGCCAATCTTGTCCCCAGTGCAAGACTAGATACAAAAGTCACAAAGAGAGTCCTCAAATGGAGGGAGATGATGATGAAGATGATGTTGATGATCTAGAGAATGATGTCAAGTATGGCCAAGGAAATAATACCAAGGCAGGGACACAATGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATACCGAACCCCCATGTTACAAATGGGCAGCTGATGTCTGGTGATATTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGGTCCTTTGGGTCAATCCGGAAAGGTTCACTCACTCCCCTATGTTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAGGAGATCAGAAGAGTGCCGGAGATTGGAGGTGAATCTGCTGGAACTTCAGCCTCTCGTCCAGAAATTGGTTCAACTGCTGGTCCGGAACGTGTTCAGGGGGCAGGGGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCAGACAAAGAGAGCAAGCGGCTAAAGAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCGTACTTGAATGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAATTCAGAGCTCAAAGAGAGACTTTCCACATTGCAGAATGAGAATCAAATGCTTAGACAAGTATGTCAATTTTGCACATTTTGTTACCATATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGGTGAATGA 951 0.4385 MYNSYTLQSKPLKNLNGQICQICGDTVGLTATGEVFVACHECAFPLCHPCYEYEQKNMSQSCPQCKTRYKSHKESPQMEGDDDEDDVDDLENDVKYGQGNNTKAGTQWEEDADLSSSSGHDSQIPNPHVTNGQLMSGDIPCATSDAQSMQTTSGPLGQSGKVHSLPYVDPKQPGPESDEEIRRVPEIGGESAGTSASRPEIGSTAGPERVQGAGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLNDLETRVKDLEKKNSELKERLSTLQNENQMLRQVCQFCTFCYHILKNTTASRRGSNSGTNNGE. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03341 316 MobiDBLite consensus disorder prediction 95 159 - -
Seca5g03341 316 FunFam Transcription factor HY5 249 289 - -
Seca5g03341 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 93 IPR013083 -
Seca5g03341 316 Pfam Zinc-binding RING-finger 10 87 IPR027934 -
Seca5g03341 316 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Seca5g03341 316 MobiDBLite consensus disorder prediction 71 233 - -
Seca5g03341 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 228 286 IPR004827 GO:0003700|GO:0006355
Seca5g03341 316 Pfam bZIP transcription factor 227 286 IPR004827 GO:0003700|GO:0006355
Seca5g03341 316 Gene3D Single helix bin 249 289 - -
Seca5g03341 316 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 143 313 IPR044280 GO:0000981|GO:0045944
Seca5g03341 316 CDD mRING-HC-C4C4_CesA 18 68 - -
Seca5g03341 316 SUPERFAMILY Leucine zipper domain 230 287 IPR046347 GO:0003700|GO:0006355
Seca5g03341 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 233 248 IPR004827 GO:0003700|GO:0006355
Seca5g03341 316 Coils Coil 225 287 - -
Seca5g03341 316 SMART brlzneu 226 290 IPR004827 GO:0003700|GO:0006355
Seca5g03341 316 CDD bZIP_HY5-like 231 282 - -
Seca5g03341 316 MobiDBLite consensus disorder prediction 213 233 - -
Seca5g03341 316 SUPERFAMILY RING/U-box 7 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03341 Seca-Chr5 89664986 89668608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03341 166 303 bZIP Transcription Factor Family AT5G11260 66.187 1.10e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca5g03341 zf-UDP 1.8e-40 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03341 K10999 - aprc:113855639 523.857