Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03339 ATGGCATTTTTTAAGAACTTTTCACATGATGAAGTTTCACATGGGGTCTTGGAAGATAAAAGCCAAGGACAGAATGCTGACAGAATTCATAGATCAATAGGTAATGAATATGCTGATGCAACTTCTAGTGAAAAGGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGTGAACCAGATGGTACCAGTAGGCTGCAGAAGGATGCAACTGCTGATGATCAAGTTGGTACAAGAGAATCAAACATAGAAACTACAAGCAGGAAAACAGCTACTGTTGGAAGCTGGGGTTCCTCATTTTGGAAGGACTGCCAGCCCATGCTCCCTCAGAATGGTTCTGAATCTGGGCATGAATCAAAAAGTGGATCAGACTATAGAAATGCAGATGAGTCCGAAGATAATTCATCAGAAGGAAGAGGGGAAAGATTAGACTCAGAAGATGATGATGGACAAAAGGATTCAGGAAAAGGTCCACGAGGACATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAGGAGCCGAGTGACTCCTTGCATTACAGGGGTTTTCACCAACCCACTGGCTCAGATTCATGGCCTCAGCGTAAGTCTACTGTTGTCAATAGGCGTGTACATAGGAAATCTAGAATTTCAGATGATGCTGAAGATGATGATGGTGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCGGACTTTGAGCCTACAACAAGTGGCCGTGCTGCAAACAAGGATAAAGATTGGGAAGGCGAAGACTCAGATGAAGCTGATGATTGTGATGAGGACATAGATGTCTCAGATAATGATGATTCTTACTTTGATAAGAAGGGTAAGGGAAGGCAACGAGGTAAAGTTGGGCGATGTGCAAGATCTACCAGAGATCGCAAATCAAATACTTCATCCAGTAGACAAAGAAGAGTTCAATCTTCTTTTCAAGATGAAGATGATGAGTCTACAACAGAGGATTCTGACAGTGAGAGTGACAAAGATTTCAAAAGCTTGAAAAAGAGAGGTGCACATGTACGCAAGAATAGTGGTCGTTCAGCTGCACCTACAAGTTATTTTATGCACAACAATGAGGTTCGCACTTCTAGCAGGACAGTGAGGAAAGTATCATATGTTGAAAGTGATGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAGTCCCAAAAGGAAGAAATTGAAGAGGATGAAGGGGACTCCATTGAAAAGGTGCTCTGGCATCAGCCAAAGGGCATGGCTGCAGAGGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTTTGTACCTGATTGGAATGAAATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCATTGTCAGTGGAAGTCTTTTGTTGAGTTGCAAAATCTCAGTGGTTTTAAGAAAGTTTTGAACTACACAAAAAAAGTGACTGAGGACATCAGGTACAGGATGAGAATCTCAAGAGAGGAGATTGAAGTCAACGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTTCTGATAGGATTAGCAAAGATAATTCTGGTAACGTTGTTCCAGAATACTTGGTTAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAGAAGGACATCGATATTGCTTTTGCTCAACATGCTATTGATGAATATAAGGCCCGTGAGGCTGCAATGTCAGTTCCAGGAAAGATGGTAGATCTTCAGCGTAAGAAGAGTAAAGAAAGTTTGCGGAAACTTGATGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGACTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCTGTATCTATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTCTATGTTGGTACTCGTGCAAGTAGAGAGGTTTGCCAACAATATGAATTTTATAATGATAAAAAAGCTGGCAGACCAATAAAGTTCAATGCACTATTGACTACATATGAAGTAGTTCTGAAGGATAAGGTAGTTCTCTCCAAGATCAAATGGAACTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAGTTGTATACAACACTTTCAGAATTTAGCACCAAGAACAAGCTGCTTATCACTGGTACTCCACTGCAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATTCTGATAAATTCAAGAGCAAGGATGACTTTGTTCAAAACTATAAGAATCTAAGTTCATTCAATGAGAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCTCACATACTTCGAAGAGTTATTAAAGATGTGGAGAAATCGTTACCCCCGAAAATTGAGCGTATTCTTAGGGTTGATATGTCTCCTCTTCAGAAACAGTATTATAAATGGATTTTGGAACGCAACTTTCATGATTTGAACAAAGGAGTCCGAGGGAATCAGGTTTCTCTTCTAAATATTGTAGTAGAATTGAAGAAGTGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCCGGAAATAGTGACTGTAGTAAACTAGATAGAATTGTCTTTAGTAGTGGCAAGCTTGTCATTCTTGATAAGCTACTTGTCAGATTGCATGTAACAAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCAGAGTATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGCACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCAGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGAGGTTTGGGTATCAATCTTGCCACAGCAGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAATGATCTGCAGGCAATGAGTAGAGCTCATCGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAAAAGATGGTTCTCGACCACTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCAGCAATCTTAAGATTTGGAGCAGAGGAGCTTTTCAAGGAAGAAAGAAACGAAGAAGAAAGCAAAAAACGACTCTTAAGTATGGACATAGATGAGATTCTTGAAAGAGCAGAGAAGGTCGAAGAGAAGGAAGATGAGGGAGAACAAGCACATGAGTTATTAAGTGCCTTTAAGGTTGCTAATTTCTGTAATGATGAAGATGATGGAAGTTTCTGGAGCCGCTGGATAAAGCCTGAAGCTGTTGCCCAAGCAGAGGTAGCTCTTGCTCCACGTGCTGCAAGGAATATTAAAAGCTATGCCGAGGATAATCAATCTGAAAGAAGTAGCAAAAGAAAAAAGAAGGAAAGTGAACTGCCAGAACGAGTTCAGAAACGCCGAAAAGCAGAGTATTCAGCTCCTACAACACCAAGGATTGATGGGGCAACTGCCCAAATTAGAAGCTGGTCGTATGGGAATTTGTCTAAAAGAGATGCACTCCGTTTTTCTCGTTCATCATATGCTTATCCCCAACTAAATCACCAGGTTATGAAATTTGGGAATGAGAGCCAAATCGGCTTAATTGCTGGTGAGGTAGGTGGTGCAGTAGGAGCAGCTCCACTTGAAGCACAAATTGAACTCTTCAATTCTCTAATTGATGGCTGCACAGAAGCAGTGGAACTTGGAAGTCTGGATCCCAAGGGGCCCTTGTTGGACTTCTTTGGTGTCCCAGTGAAGGCAAATGATTTACTTACCCGTGTTCAAGAACTTCAAGTCCTAGCAAAGCGCATTAGTCGGTATGAAGATCCCATTGCACAGTTCCGCGTTTTAACATATCTTAAACCTTCAAACTGGTCAAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAGTACATTATCATGGATTTGGCAATTGGGAAAAAATAAGATTAGATGAAAGACTAGGTCTTACAAAGAAAATTGCACCAGTGGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTGTTGGAGCAAGAACTAGCTGCTCTTGGTGTGAAAAATGCCTATAACAAAGTTGGAAGGAAGACTACCAAGAAAGAGAGAGAACATCTCGTGGACATCTCATTGTCACGTGGGCAGGAGAAAAGGAAAAAATTGGGCTCTTCTAAAGTTATTGTCCAAATGAGAAAGGATAGACATCAGAAACCTCTAAAAGTTGAACCTATTGTAAAAGAAGAGGGTGAAATGTCTGATGATGGGGAAGTATATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACCTTGAAACGGCTTCACAGGTTGCAGACAACCAGTGCTAATCTTCCTAAGGAAAAGGTGCTTTCAAAAATCCGCAACTACTTGCAGCTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGACCATGAAGAGGAACCCTACAAGCAAGATAGAATGACTATGCGATTGTGGAAGTATGTTTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATTTATTCAAAACTTAAGCTGGAGCAAAATGTGGCCGGGGTTGGCCCCTCTCATGCCAATGGGTCAGCATCTGGTCCATTTAACAGGAATGGAAACCCTAACCATTCTTATCCATTCCCTCGTCAGATGGAGAGGCAAAGAGGATTAAAAAATGCGACGCCCTACCAAATGCCAGAACCCATCAATAACACAGGCATATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTAATGGTCAGTTCCAGGGTCAGCCACCACCTCAAAGAATCATGAGTAATGGAATTCAGATTATGGATCCTAATTCGCTGGGGATCCTTGGGGCTGGACCATCTGACAGACGTCTTGTTAGTGAGAAACCATTTAAGACTCGATCTGGTGGGTTTCCTTCAAGACAAGAATTCTCTTCAGGAATTGAGTAG 5310 0.4105 MAFFKNFSHDEVSHGVLEDKSQGQNADRIHRSIGNEYADATSSEKEFDMNMEAQYESDGEPDGTSRLQKDATADDQVGTRESNIETTSRKTATVGSWGSSFWKDCQPMLPQNGSESGHESKSGSDYRNADESEDNSSEGRGERLDSEDDDGQKDSGKGPRGHSDVPAEEMLSDEYYEQDGEEPSDSLHYRGFHQPTGSDSWPQRKSTVVNRRVHRKSRISDDAEDDDGDADYEEEDEADEDDPDDADFEPTTSGRAANKDKDWEGEDSDEADDCDEDIDVSDNDDSYFDKKGKGRQRGKVGRCARSTRDRKSNTSSSRQRRVQSSFQDEDDESTTEDSDSESDKDFKSLKKRGAHVRKNSGRSAAPTSYFMHNNEVRTSSRTVRKVSYVESDESEEADEGKKKSQKEEIEEDEGDSIEKVLWHQPKGMAAEAQRNNRSTEPVLMSHLFDFVPDWNEMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKVTEDIRYRMRISREEIEVNDVSKEMDLDIIKQNSQVERIISDRISKDNSGNVVPEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDEYKAREAAMSVPGKMVDLQRKKSKESLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKAGRPIKFNALLTTYEVVLKDKVVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGNSDCSKLDRIVFSSGKLVILDKLLVRLHVTKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNEEESKKRLLSMDIDEILERAEKVEEKEDEGEQAHELLSAFKVANFCNDEDDGSFWSRWIKPEAVAQAEVALAPRAARNIKSYAEDNQSERSSKRKKKESELPERVQKRRKAEYSAPTTPRIDGATAQIRSWSYGNLSKRDALRFSRSSYAYPQLNHQVMKFGNESQIGLIAGEVGGAVGAAPLEAQIELFNSLIDGCTEAVELGSLDPKGPLLDFFGVPVKANDLLTRVQELQVLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQELAALGVKNAYNKVGRKTTKKEREHLVDISLSRGQEKRKKLGSSKVIVQMRKDRHQKPLKVEPIVKEEGEMSDDGEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLDHEEEPYKQDRMTMRLWKYVSTFSHLSGERLHQIYSKLKLEQNVAGVGPSHANGSASGPFNRNGNPNHSYPFPRQMERQRGLKNATPYQMPEPINNTGISEAWKRRRRAESNGQFQGQPPPQRIMSNGIQIMDPNSLGILGAGPSDRRLVSEKPFKTRSGGFPSRQEFSSGIE. 1770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03339 1769 MobiDBLite consensus disorder prediction 265 283 - -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 11 26 - -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 386 416 - -
Seca5g03339 1769 SUPERFAMILY Chromo domain-like 507 583 IPR016197 -
Seca5g03339 1769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1126 IPR027417 -
Seca5g03339 1769 SMART DUF4208_2 1529 1634 IPR025260 -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 62 76 - -
Seca5g03339 1769 ProSiteProfiles Chromo and chromo shadow domain profile. 415 494 IPR000953 -
Seca5g03339 1769 Gene3D - 851 1081 IPR027417 -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 1739 1769 - -
Seca5g03339 1769 Pfam Domain of unknown function (DUF4208) 1541 1633 IPR025260 -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 1211 1243 - -
Seca5g03339 1769 Gene3D - 530 582 - -
Seca5g03339 1769 Gene3D - 611 850 IPR038718 -
Seca5g03339 1769 CDD SF2_C_SNF 926 1061 - -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 302 316 - -
Seca5g03339 1769 FunFam Photoperiod-independent early flowering 1 592 864 - -
Seca5g03339 1769 Gene3D - 1357 1472 - -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 120 169 - -
Seca5g03339 1769 Pfam Helicase conserved C-terminal domain 937 1050 IPR001650 -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 191 207 - -
Seca5g03339 1769 Pfam Chromo (CHRromatin Organisation MOdifier) domain 529 583 IPR023780 -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 1209 1246 - -
Seca5g03339 1769 CDD CD1_tandem 413 493 - -
Seca5g03339 1769 SMART ultradead3 616 815 IPR014001 -
Seca5g03339 1769 Coils Coil 1134 1161 - -
Seca5g03339 1769 SMART helicmild6 966 1050 IPR001650 -
Seca5g03339 1769 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 851 1081 - -
Seca5g03339 1769 ProSiteProfiles Chromo and chromo shadow domain profile. 528 592 IPR000953 -
Seca5g03339 1769 SUPERFAMILY Chromo domain-like 412 495 IPR016197 -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 1 416 - -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 224 247 - -
Seca5g03339 1769 Pfam SNF2-related domain 639 908 IPR000330 GO:0005524|GO:0140658
Seca5g03339 1769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 940 1091 IPR001650 -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 361 385 - -
Seca5g03339 1769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 841 IPR027417 -
Seca5g03339 1769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 632 804 IPR014001 -
Seca5g03339 1769 Gene3D - 402 528 - -
Seca5g03339 1769 CDD CD2_tandem 526 582 - -
Seca5g03339 1769 MobiDBLite consensus disorder prediction 77 119 - -
Seca5g03339 1769 SMART chromo_7 413 496 IPR000953 -
Seca5g03339 1769 SMART chromo_7 526 585 IPR000953 -
Seca5g03339 1769 FunFam protein CHROMATIN REMODELING 5 isoform X2 530 582 - -
Seca5g03339 1769 Coils Coil 1080 1100 - -
Seca5g03339 1769 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 133 1651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03339 Seca-Chr5 89620474 89646835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03339 642 1077 RAD5 or RAD16-like Gene Family AT1G02670 25.941 7.99e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g03339 SNF2_N 4.2e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03339 K11367 - gmx:100792398 2818.88