Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03337 ATGGCAACTCCTCTTTCTTTCAGTTTTGTACTCTCTTCCCTCCTCCTTCTCCTTGTGTGTCTCACTAGTCCTGCTTCTGTTTCTTCACTTCCTCTTTCTTTGAGAAAGCAAGCTTCTATCTTGGTTTCTCTGAAACAAGATTTTGAAGCTGCTAATGCTAACTCTTCTTTGAGAACCTGGAACATGTCTAACTACTTGTCCCTTTGCACTTGGTATGGCATTCAGTGTGACCATGATAACATGTCTGTGGTGTCACTTGACATATCCAATTTAAATGTTTCTGGGTCACTTTCACCTTCCATCACAGAACTCTTGAGTCTTGAGAGTGTGTCAATTCAGGGAAATAGCTTCTCTGGGGACTTCCCTGCTGATATTCACAAGCTAACAAGGCTGAGATTCCTCAACATTTCCAACAACATGTTCAGTGGAAAGTTGAGTTGGGAATTTTCTCAGTTGAAGGAACTTGAAGTGCTGGATGCTTATAACAATGATTTCAATGGCTCACTTCCTGAGGGTGTCACTGATCTACCAAGGCTCAAGCAGTTGAATTTTGGCGGGAATTACTTCTCTGGGACAATCCCTTCAAGGTATGGAAACATGGGGCAGCTCAACTTTCTGTCTCTTGCAGGAAATGATTTGAGTGGTTTCATACCAAGTGAGCTTGGAAATCTTACTAATCTGACTCATCTTTATTTGGGATACTACAATCAATTTGATGGTGGAATCCCATCTCAATTTGGTAAGTTGAACAATTTGGTTCATTTAGACCTTGCAAATTGTGGCTTGAAAGGTTCAATTCCACCTGAGTTGGGAAACCTTTACAAGTTAGACACTCTCTTCTTGCAAACTAATCAGCTCACAGGTTCAATCCCACCCCAGCTAGGAAACTTGAGTAGCTTGAAAGCTCTTGATCTATCATTCAACAAACTAACAGGAGACATCCCAAATGAGTTCTCAGGCCTTAAGGAGCTTATCCTCTTGAACTTATTTATCAACAGGTTTCATGGAGAAATTCCTCATTTCATTTCTGAGCTACCTAAATTGGAGGTGTTGAAGCTTTGGCAGAACAACTTCACTGGAGTAATTCCTTCAAAGCTTGGCCAGAATGGAAAATTGACTGAGCTTGACTTGTCAACAAATAAGCTCACTGGATTAGTGCCAAAATCTCTATGCCTTGGAAAGAGGCTTAAAATTTTGATCTTGCTAAAGAACTTTCTGTTTGGATCTTTGCCTGATGATCTTGGTCAATGCTACACACTCCAAAGAGTTCGTCTTGGTCAAAACTATTTGACTGGTCCACTACCACATGGATTTCTTTATTTGCCTGAGCTATCTCTTTTGGAACTACAGAACAATTATCTTAGTGGTGGACTTCCACAAGAAACAAGCAATGCACCCTCCAAACTTGGACAGTTGAATCTATCAAACAATCGTTTCTCAGGGTCTCTACCAACCTCAATTGGAAATTTTCCAAATTTACAGATTCTGCTGATTAGTGGAAATAGATTCTCTGGAGAAATCCCACCAGATATAGGGAGGTTGAAAAATATCCTCAAGTTGGATTTAAGTATGAACAACTTTTCAGGTACTATTCCTCCAGAGATAGGTAATTGTGCTTTACTCACATTTTTAGATTTGAGCCAAAACCAACTATTAGGCCCTATTCCAGTTCAAGTTGCTCAAATTCATATATTAAATTATCTTAATGTCTCATGGAACAACCTAAACCAAAGCCTTCCAAAGGAACTTGGGGCCATGAAGGGCTTAACTTCAGCAGATTTCTCTCACAATAACTTCTCTGGTTCAATACCTGAGGGGGGACAATTTTCAATATTTAATTCTACATCCTTTGTGGGTAACCCTCAGCTCTGTGGATATGACTTCAATCCATGCAACCTTTCTTCAACAGAGGTATTGGAATCTCAAGAAAAAAACAGTGCAAAACCAAGAGTTCCTGGGAAGTTTAAGTTCCTTTTTGCATTGGCATTGTTGGGATGCTCATTGGTTTTTGCAATCTTAGCCATCATCAAGAGTAGAAAGGCAAGGAGGCACTCCAATTCATGGAAGCTCACAGCATTTCAGAAGCTGGAATATGGAAGTGAAGACATCATAGGGTGTATAAAGGAAAGCAATGTCATAGGAAGAGGTGGAGCTGGGGTTGTGTATAGAGGAACCATGCCAAATGGAGAGGAAGTGGCTGTGAAGAAGCTATTAGGAATCAACAAAGGCTCTTCTCATGATAATGGCCTCTCTGCAGAAATAAGGACATTGGGTAGAATCAGGCACAGGTACATTGTAAGGTTGCTAGCATTTTGTTCAAATAGAGAGACCAATTTACTTGTTTATGATTACATGCCAAATGGAAGCTTGGGTGAAGTCTTGCATGGGAAGAGGGGTGAGTTTCTCAAGTGGGATACAAGGCTGAAAATAGCCATAGAAGCTGCAAAAGGACTTTGTTATTTGCATCATGATTGTTCCCCTTTGATAATCCATAGAGATGTCAAGTCAAACAACATATTATTGAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCATGCAAGATAATGGGGCATCAGAGTGCATGTCTTCCATTGCTGGTTCTTATGGCTATATAGCTCCAGAATATGCATACACATTGAAAGTTGATGAGAAAAGTGATGTGTATAGTTTTGGAGTGGTGCTGTTAGAACTGCTAACAGGGAGAAGACCAGTGGGGGATTTTGGGGAAGAGGGATTAGACATTGTTCAATGGACCAGGATGCAAACCAATTGGAACAAAGAGATGGTGATGAAGATACTTGATGAGAGGCTACGTCACATTCCTTTAGATGAAGCAAAGCAGGTGTTTTTTGTGGCCATGTTGTGTGTTCATGAACACAGCGTGGAGCGACCAACCATGAGGGAAGTGGTTGAAATGCTTGCACAAGCAAAACAACCAAACACATTTCAAATGCAGTGA 2976 0.4059 MATPLSFSFVLSSLLLLLVCLTSPASVSSLPLSLRKQASILVSLKQDFEAANANSSLRTWNMSNYLSLCTWYGIQCDHDNMSVVSLDISNLNVSGSLSPSITELLSLESVSIQGNSFSGDFPADIHKLTRLRFLNISNNMFSGKLSWEFSQLKELEVLDAYNNDFNGSLPEGVTDLPRLKQLNFGGNYFSGTIPSRYGNMGQLNFLSLAGNDLSGFIPSELGNLTNLTHLYLGYYNQFDGGIPSQFGKLNNLVHLDLANCGLKGSIPPELGNLYKLDTLFLQTNQLTGSIPPQLGNLSSLKALDLSFNKLTGDIPNEFSGLKELILLNLFINRFHGEIPHFISELPKLEVLKLWQNNFTGVIPSKLGQNGKLTELDLSTNKLTGLVPKSLCLGKRLKILILLKNFLFGSLPDDLGQCYTLQRVRLGQNYLTGPLPHGFLYLPELSLLELQNNYLSGGLPQETSNAPSKLGQLNLSNNRFSGSLPTSIGNFPNLQILLISGNRFSGEIPPDIGRLKNILKLDLSMNNFSGTIPPEIGNCALLTFLDLSQNQLLGPIPVQVAQIHILNYLNVSWNNLNQSLPKELGAMKGLTSADFSHNNFSGSIPEGGQFSIFNSTSFVGNPQLCGYDFNPCNLSSTEVLESQEKNSAKPRVPGKFKFLFALALLGCSLVFAILAIIKSRKARRHSNSWKLTAFQKLEYGSEDIIGCIKESNVIGRGGAGVVYRGTMPNGEEVAVKKLLGINKGSSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYDYMPNGSLGEVLHGKRGEFLKWDTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFMQDNGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGEEGLDIVQWTRMQTNWNKEMVMKILDERLRHIPLDEAKQVFFVAMLCVHEHSVERPTMREVVEMLAQAKQPNTFQMQ. 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03337 991 Gene3D Ribonuclease Inhibitor 34 198 IPR032675 -
Seca5g03337 991 SUPERFAMILY Protein kinase-like (PK-like) 701 979 IPR011009 -
Seca5g03337 991 SMART serkin_6 707 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03337 991 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Seca5g03337 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 349 635 - -
Seca5g03337 991 ProSiteProfiles Leucine-rich repeat profile. 371 392 IPR001611 GO:0005515
Seca5g03337 991 ProSiteProfiles Protein kinase domain profile. 707 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03337 991 SUPERFAMILY L domain-like 314 639 - -
Seca5g03337 991 SMART LRR_typ_2 562 586 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 490 514 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 200 224 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 249 273 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 441 465 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 128 151 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 370 392 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 152 176 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 345 369 IPR003591 -
Seca5g03337 991 SMART LRR_typ_2 297 320 IPR003591 -
Seca5g03337 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 676 784 - -
Seca5g03337 991 Gene3D Ribonuclease Inhibitor 199 312 IPR032675 -
Seca5g03337 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 237 342 - -
Seca5g03337 991 Gene3D Phosphorylase Kinase; domain 1 677 784 - -
Seca5g03337 991 SUPERFAMILY L domain-like 64 387 - -
Seca5g03337 991 Pfam Protein tyrosine and serine/threonine kinase 709 979 IPR001245 GO:0004672|GO:0006468
Seca5g03337 991 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Seca5g03337 991 Pfam Leucine rich repeat 275 333 IPR001611 GO:0005515
Seca5g03337 991 Gene3D Transferase(Phosphotransferase) domain 1 785 991 - -
Seca5g03337 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 36 148 - -
Seca5g03337 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Seca5g03337 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 785 991 - -
Seca5g03337 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 245 981 - -
Seca5g03337 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 149 236 - -
Seca5g03337 991 Gene3D Ribonuclease Inhibitor 370 635 IPR032675 -
Seca5g03337 991 Gene3D Ribonuclease Inhibitor 313 369 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03337 Seca-Chr5 89595768 89600170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03337 41 981 Receptor kinase-like Gene Family AT5G65700 58.140 0.0 1103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca5g03337 PK_Tyr_Ser-Thr 9.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03337 - - gmx:100815103 1688.7