Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03333 ATGACGAGTGCTATTTTCAGAAGGTCTTCTTCCACATTCTCACGCCGTTTCTTCGCCGCCGCCACCTCCGTCAAGCCGCTTCCTCACTTCCACCACCGCCTCGGCGCCGTCCCTCTCCGGAACGGTGTCTCCAGCGAAGGAGCCAGGGCCTTTCACGCGAAATCTGGACCGTTGAACTTCCACTCGTCTCTGGTTTCTCGTGCCGCGCTAAATGCCTTGGACCACGATTACGTGCACGACGATGAAGGTTCTAGTCCGAACGGCGACGAAGGTCTCGAGATCGCGAAGCTCGGGATCTCTCAGGACATCGTGGATGCTCTGGCCAAGAAAGGGATCGCGAAGCTCTTCCCCATTCAGAGAGCTGTATTGGAACCTGCGATGCAAGGGCGTGATATGATTGGTCGAGCTAGAACCGGAACTGGGAAAACTCTAGCTTTTGGGATACCTATCCTGGATAGGATTATTCAGTTTAATGCTAAGCATGGGCGAGGAAGGGACCCTTTGGCTTTGGTTTTGGCTCCTACCAGAGAACTTGCGCGGCAGGTTGAAAAGGAATTCAACGAGGCTGCACCCAACTTGGACACAATTTGTCTTTATGGGGGTATGCCCATTAGTCAACAAATGAGGCAGCTTGATTATGGTGTAGATATTGCAGTTGGCACACCTGGTCGAATTATTGACCTTCTCAACAGGGGTTCACTGAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGAAGTGGAGAAGATCTTGGAGAGGTTGCCTCCAAAGCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAATATTACCCGCAATTACCTAAACAACCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGCTGGCAGATGGAATTTCACTGTACTCTATTGCATCTGATATGTATACTAAAGCGGGAATCCTTGCACCTCTAGTAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCATATATGATCGCAAAAAGCCTTAAATGTGAAGCCTTGCATGGAGATATTTCACAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACAACCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCTAATGTTGATCTCGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCATCGATCTGGACGAACAGGACGTGCTGGAAAGAAAGGAACTGCCATTCTTGTTTACACAGAAGATCAATTCAGGGCTGTAAGGAGTATTGAGCGCGATGTTGGATGTAGATTTACGGAGACTGTACATTCCCTTATTACAAAATTCTATGAATTGCATGCTCAATTATACAAGCTACCAAAGATTGAGGTTGAAAGTGGATCAGCAGACATGTTTGGTCACATGAGTAGTGGCCGATTTGCCCCTTCAGGAGGTATGCGAGATCGTCGATCTGGTGGTACAGGTTTTGGTGGTGGTTCTCGATTTGGCCGTTCTGGGAGTTACAGTAACCCTGGATTTGGCCGAACTGGCTATGGGAATTCTGGTGAGGTGGGAAGGTTTGGTGGATCATCTTCTAGTCGTTTTGGTGGCCCAGGTTCGAGTCAGTTAGGAGGGGGGTTTTCTGGTAATTCTTCTGGTGAAATGGGTAAATATGGTGGACCAAGCTCCGGTCGTTACGGTTCCTCTGGTGGCTTTGGTTCAGGTCAACCAGAAACTCAATCTGGTGGCTCTCGCCCAGGTGGTTTTGGCGGATTTGGTAGTTCAGGTCGTTCCAGCGACTTTGGATATTTTGGCTCAGGTCAATCTGGTGCATTTGGTGACAGAAATTGA 1914 0.4692 MTSAIFRRSSSTFSRRFFAAATSVKPLPHFHHRLGAVPLRNGVSSEGARAFHAKSGPLNFHSSLVSRAALNALDHDYVHDDEGSSPNGDEGLEIAKLGISQDIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFNEAAPNLDTICLYGGMPISQQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVVLDEADQMLQVGFQEEVEKILERLPPKRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIASDMYTKAGILAPLVTEHAKGGKCIVFTQTKRDADRLSYMIAKSLKCEALHGDISQAQRERTLAGFRNNHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQFRAVRSIERDVGCRFTETVHSLITKFYELHAQLYKLPKIEVESGSADMFGHMSSGRFAPSGGMRDRRSGGTGFGGGSRFGRSGSYSNPGFGRTGYGNSGEVGRFGGSSSSRFGGPGSSQLGGGFSGNSSGEMGKYGGPSSGRYGSSGGFGSGQPETQSGGSRPGGFGGFGSSGRSSDFGYFGSGQSGAFGDRN. 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03333 637 CDD SF2_C_DEAD 323 440 - -
Seca5g03333 637 MobiDBLite consensus disorder prediction 588 604 - -
Seca5g03333 637 CDD DEADc 103 298 - -
Seca5g03333 637 Gene3D - 312 496 IPR027417 -
Seca5g03333 637 SMART ultradead3 111 314 IPR014001 -
Seca5g03333 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 452 IPR027417 -
Seca5g03333 637 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 93 465 - -
Seca5g03333 637 Pfam DEAD/DEAH box helicase 116 285 IPR011545 GO:0003676|GO:0005524
Seca5g03333 637 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 471 IPR001650 -
Seca5g03333 637 Pfam Helicase conserved C-terminal domain 326 431 IPR001650 -
Seca5g03333 637 Gene3D - 93 301 IPR027417 -
Seca5g03333 637 SMART helicmild6 351 431 IPR001650 -
Seca5g03333 637 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 297 IPR014001 -
Seca5g03333 637 MobiDBLite consensus disorder prediction 499 637 - -
Seca5g03333 637 MobiDBLite consensus disorder prediction 546 570 - -
Seca5g03333 637 FunFam ATP-dependent RNA helicase RhlE 83 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03333 Seca-Chr5 89562683 89569552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03333 97 453 Eukaryotic Initiation Factors Gene Family AT3G19760 34.072 5.11e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03333 - - gmx:100802553 820.461