LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g03331	ATGACACATTCAACACTACCTTCTCCTTCTTCCTTCACTTGTGATTGGACTTATGATGTCTTCCTCAGCTTCAGAGGTGTCGATACCCGCAACCATTTCACCGGTAATCTCTACAATTCTCTGGATCAAAGGGGCATCCACACTTTCCTCGATGATGAAGAGCTCAGGAAAGGAGAAGAAATCACACCAGCTCTTCACCAAGCCATTCAAAAATCTAGAATTTTCATTGCTGTTTTCTCTGAGAACTATGCATCCTCAACTCATTGTTTGGATGAACTTGTCACAATCCTTGATTGTTTGAAGGCACCAGGACGGTTGTTTAGACCAGTTTTCTATGATGTGGACCCATCCCAAGTTCGACACCAAACTGGGAGTTATGCAGAAGCTTTGGCAAAACATGAAGAGAGGTTCTATGATGACAAAGAAAAGGTGAAAAAATGGAGGGATGCTTTACGTCAAGCTGCTAATGTCTCTGGCTGGCATTTCCAACACGGGTCTCAATCTGAATATAAGTTTATTGGGAAGATTGTTGAAGAGGTATCTGAAAAGATCAATCGTACTCCTTTACATGTTGCTGATAACCCTGTTGCACTAGAGTCTCCTGTGCTAGAAATAGCATCTATCCTGCAACTTGGATCAGATGAGGGGGTTAACATGTTAGGCATTTATGGAATTGGTGGAATAGGTAAATCAACAATTGCTCGTGCTGTGTACAACTTGATTGCTGATCAATTTGAAGGTTTGTGTTTCCTTGCTGACATAAGAGAAAGGGCAATTAATCACCATGGTCTTTCACAACTCCAAGAAACACTGCTTTGTGAAATACTTGGGGAGAAAGATATCAGAGTGGGAGATGTTTACAGAGGGATTTCAATAATTAAAAAGAGGCTACACAGAAAGAAGGTCCTTTTGATTCTTGATAATGTTGACAAACCAAAGCAGTTACAGGTACTTGCTGGAGGACTTGATTGGTTTGGCCCTGGCAGCAAAATCATAATCACAACAAGAGACAATCATTTGCTAGCCACTCATGGGATTGAGAGGTTATATGAGGTTAAACAGTTAAATGATGAAAAAGCCCTTGAATTGTTTAGCTGGCATGCCTTCAAAAATAATAACATTGTTCCTCCAGCTTATGCTGATATTTCAAAACGTGCAGTTTGTTATGCTGGTGGCCTTCCATTGGCTTTGGAGGTGATAGGTTCTCACTTGTTTGGCAAAAGTTTAGATGTATGGAAATCTGCATTAGATAAATATGAGAGAGTTCTTCATAAGGAGATCCATGAAATACTTAAAGTTAGCTATGATGATTTGGAAGAAGAAGAGAAGGGTATTTTCCTTGACATCGCTTGTTTCTTCAATTCTTATGAAATGGACTATGTCAAAGAAATACTATACTTACATGGTTTTCATGCGGAAAATGGCATTCAAGTGTTAAGTAGCAAATCTCTGATAAAAATTGATGGCAATGGTTGTGTGAGAATGCATGACTTAATTCAAGACATGGGCAGAGAAATTGTAAGGCAGGAATCAACATTGGAGCCTGGCAAACGCAGTAGATTATGGTTTAATGATGACATTGTGCATGTTTTAGAAGAAAACACGGGAACTGATACAATTGAAGCTGTAATCATTGACTTGTACAATGACAAGGAAGTGCAGTGGAATGGGAAAGCATTCAAGAAGATGAAAAATCTGAGAATTCTCATAATTAGAAATGCTAGCTTTTCTAGAGGCCCTCAAAATCTGCCAAATAGTTTGAGAGTTCTAGACTGGAGTGGATATCCTTCACCATCTTTACCAGCTGATTTTAAACCCAAGAATCTTGTGATACTTAGCCTACCTGAAAGTTGCCTAAAATTGTTCAAATCACAAAAGGTGTTTGAGTCCATGAGCTTTATGGATTTTGAAAGCTGCAAATTCTTAACTGAACTACCTAGCTTGTCTGGACTACCAAATTTGGGAGCACTATGTCTTGATAATTGCTCTAATCTAATTAGGATTCATGGCTCAATTGGATCCCTTCATAGACTCATGCTATTGAGTGCTCAAGGATGTACCCAGCTTGAAATGTTGGTACCCTACATCAATTTACCATCTCTAGAGACTCTGGATCTGAGGGGTTGCTCAAGTCTTAAAAGCTTCCCAGAAGTATTAGGAGTGATGGAGAATATAAGAGATGTTTATTTAGACCAGACTGCCTTAGATAAATTGCCATTTTCAATTGGAAATCTTGTTGGGATCCAAAGGTTGTTCTTGAGGGAATGCCAAAGGCTGATTCAGCTACCAAGTAGTATCCATATATTGCCTAAACTTGAGATAATAATGGCTTATGATTCTAGGGGATTTCGGTTATTTGAGGATAAAGAAAAAGTGAGACCAGAAGTGTTTCCAAAAGTCATGCTTGTTTATACTGAAGGCAGGGGGATCTTACTTGATGTGTGTTCTCTTGACATATGCCCCAATAATGTCATAGAAGTATGTAGACCTCCATGGAATCCCCATGGACTTGAGGGTAGTGATTTTGGATTTGTGTTCAAAGGGATTCTAGAAGGGAGAGTAAATTGGTACAAGCTTGGAAGCAAGGAATCATCTCTGTGTTTTTGGTTCAGAAAGAAATTCCCCCAGATAGCTCTATGCTGTGCTGGAGAACCTGGCATATGTAAGAACATGGTGTTGGATTTCAAGTTCAGTGTACTCATCAATGGCACTAAGCAATTCAATTCTTCATGTAACTACATATTCTCTACAGAAAGAATGACAGACCAAATACTTATGTGTGATCTACAATGCAAAGTAGAGAGGGCATTTTCAGATCATGAATGGAATGAAGTAGAGATTTTATGTGAGTTGAAATATCCCATTCCATGTGGCTCTGAAAGAGAAATGGCCACACAGGATGGGACTGCAATGATTCCAAGTTGGTCCCTCATTTATGTGTATGAAGAAAACATGGAGGATATCAAATTTCTGCCTCTAAGCCAGGAATGTAAAGAAGCACAGAGAAGAAAGGAAACACTATTCGGCTTTCACTCTATGCTCAATAGTCATGGATTGAATTGGATTGGTTTTTGA	3075	0.3912	MTHSTLPSPSSFTCDWTYDVFLSFRGVDTRNHFTGNLYNSLDQRGIHTFLDDEELRKGEEITPALHQAIQKSRIFIAVFSENYASSTHCLDELVTILDCLKAPGRLFRPVFYDVDPSQVRHQTGSYAEALAKHEERFYDDKEKVKKWRDALRQAANVSGWHFQHGSQSEYKFIGKIVEEVSEKINRTPLHVADNPVALESPVLEIASILQLGSDEGVNMLGIYGIGGIGKSTIARAVYNLIADQFEGLCFLADIRERAINHHGLSQLQETLLCEILGEKDIRVGDVYRGISIIKKRLHRKKVLLILDNVDKPKQLQVLAGGLDWFGPGSKIIITTRDNHLLATHGIERLYEVKQLNDEKALELFSWHAFKNNNIVPPAYADISKRAVCYAGGLPLALEVIGSHLFGKSLDVWKSALDKYERVLHKEIHEILKVSYDDLEEEEKGIFLDIACFFNSYEMDYVKEILYLHGFHAENGIQVLSSKSLIKIDGNGCVRMHDLIQDMGREIVRQESTLEPGKRSRLWFNDDIVHVLEENTGTDTIEAVIIDLYNDKEVQWNGKAFKKMKNLRILIIRNASFSRGPQNLPNSLRVLDWSGYPSPSLPADFKPKNLVILSLPESCLKLFKSQKVFESMSFMDFESCKFLTELPSLSGLPNLGALCLDNCSNLIRIHGSIGSLHRLMLLSAQGCTQLEMLVPYINLPSLETLDLRGCSSLKSFPEVLGVMENIRDVYLDQTALDKLPFSIGNLVGIQRLFLRECQRLIQLPSSIHILPKLEIIMAYDSRGFRLFEDKEKVRPEVFPKVMLVYTEGRGILLDVCSLDICPNNVIEVCRPPWNPHGLEGSDFGFVFKGILEGRVNWYKLGSKESSLCFWFRKKFPQIALCCAGEPGICKNMVLDFKFSVLINGTKQFNSSCNYIFSTERMTDQILMCDLQCKVERAFSDHEWNEVEILCELKYPIPCGSEREMATQDGTAMIPSWSLIYVYEENMEDIKFLPLSQECKEAQRRKETLFGFHSMLNSHGLNWIGF.	1025

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g03331	1024	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	186	-	-
	Seca5g03331	1024	SMART	till_3	17	157	IPR000157	GO:0007165
	Seca5g03331	1024	Gene3D	-	183	347	IPR027417	-
	Seca5g03331	1024	SUPERFAMILY	L domain-like	542	782	-	-
	Seca5g03331	1024	Gene3D	Ribonuclease Inhibitor	531	694	IPR032675	-
	Seca5g03331	1024	Gene3D	Ribonuclease Inhibitor	695	782	IPR032675	-
	Seca5g03331	1024	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	775	IPR044974	GO:0006952
	Seca5g03331	1024	Pfam	NB-ARC domain	204	436	IPR002182	GO:0043531
	Seca5g03331	1024	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	160	IPR035897	-
	Seca5g03331	1024	SUPERFAMILY	"Winged helix" DNA-binding domain	425	532	IPR036390	-
	Seca5g03331	1024	Gene3D	-	12	182	IPR035897	-
	Seca5g03331	1024	Gene3D	-	354	439	IPR042197	-
	Seca5g03331	1024	Pfam	TIR domain	18	188	IPR000157	GO:0007165
	Seca5g03331	1024	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	449	IPR027417	-
	Seca5g03331	1024	PRINTS	Disease resistance protein signature	390	404	-	-
	Seca5g03331	1024	PRINTS	Disease resistance protein signature	296	310	-	-
	Seca5g03331	1024	PRINTS	Disease resistance protein signature	219	234	-	-
	Seca5g03331	1024	PRINTS	Disease resistance protein signature	696	712	-	-
	Seca5g03331	1024	ProSiteProfiles	TIR domain profile.	16	184	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g03331	Seca-Chr5	89557992	89561851	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g03331	7	791	WRKY Transcription Factor Family	AT4G12020	34.198	2.76e-105	360

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g03331	-		-	mtr:11441658	1458.74