Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03331 ATGACACATTCAACACTACCTTCTCCTTCTTCCTTCACTTGTGATTGGACTTATGATGTCTTCCTCAGCTTCAGAGGTGTCGATACCCGCAACCATTTCACCGGTAATCTCTACAATTCTCTGGATCAAAGGGGCATCCACACTTTCCTCGATGATGAAGAGCTCAGGAAAGGAGAAGAAATCACACCAGCTCTTCACCAAGCCATTCAAAAATCTAGAATTTTCATTGCTGTTTTCTCTGAGAACTATGCATCCTCAACTCATTGTTTGGATGAACTTGTCACAATCCTTGATTGTTTGAAGGCACCAGGACGGTTGTTTAGACCAGTTTTCTATGATGTGGACCCATCCCAAGTTCGACACCAAACTGGGAGTTATGCAGAAGCTTTGGCAAAACATGAAGAGAGGTTCTATGATGACAAAGAAAAGGTGAAAAAATGGAGGGATGCTTTACGTCAAGCTGCTAATGTCTCTGGCTGGCATTTCCAACACGGGTCTCAATCTGAATATAAGTTTATTGGGAAGATTGTTGAAGAGGTATCTGAAAAGATCAATCGTACTCCTTTACATGTTGCTGATAACCCTGTTGCACTAGAGTCTCCTGTGCTAGAAATAGCATCTATCCTGCAACTTGGATCAGATGAGGGGGTTAACATGTTAGGCATTTATGGAATTGGTGGAATAGGTAAATCAACAATTGCTCGTGCTGTGTACAACTTGATTGCTGATCAATTTGAAGGTTTGTGTTTCCTTGCTGACATAAGAGAAAGGGCAATTAATCACCATGGTCTTTCACAACTCCAAGAAACACTGCTTTGTGAAATACTTGGGGAGAAAGATATCAGAGTGGGAGATGTTTACAGAGGGATTTCAATAATTAAAAAGAGGCTACACAGAAAGAAGGTCCTTTTGATTCTTGATAATGTTGACAAACCAAAGCAGTTACAGGTACTTGCTGGAGGACTTGATTGGTTTGGCCCTGGCAGCAAAATCATAATCACAACAAGAGACAATCATTTGCTAGCCACTCATGGGATTGAGAGGTTATATGAGGTTAAACAGTTAAATGATGAAAAAGCCCTTGAATTGTTTAGCTGGCATGCCTTCAAAAATAATAACATTGTTCCTCCAGCTTATGCTGATATTTCAAAACGTGCAGTTTGTTATGCTGGTGGCCTTCCATTGGCTTTGGAGGTGATAGGTTCTCACTTGTTTGGCAAAAGTTTAGATGTATGGAAATCTGCATTAGATAAATATGAGAGAGTTCTTCATAAGGAGATCCATGAAATACTTAAAGTTAGCTATGATGATTTGGAAGAAGAAGAGAAGGGTATTTTCCTTGACATCGCTTGTTTCTTCAATTCTTATGAAATGGACTATGTCAAAGAAATACTATACTTACATGGTTTTCATGCGGAAAATGGCATTCAAGTGTTAAGTAGCAAATCTCTGATAAAAATTGATGGCAATGGTTGTGTGAGAATGCATGACTTAATTCAAGACATGGGCAGAGAAATTGTAAGGCAGGAATCAACATTGGAGCCTGGCAAACGCAGTAGATTATGGTTTAATGATGACATTGTGCATGTTTTAGAAGAAAACACGGGAACTGATACAATTGAAGCTGTAATCATTGACTTGTACAATGACAAGGAAGTGCAGTGGAATGGGAAAGCATTCAAGAAGATGAAAAATCTGAGAATTCTCATAATTAGAAATGCTAGCTTTTCTAGAGGCCCTCAAAATCTGCCAAATAGTTTGAGAGTTCTAGACTGGAGTGGATATCCTTCACCATCTTTACCAGCTGATTTTAAACCCAAGAATCTTGTGATACTTAGCCTACCTGAAAGTTGCCTAAAATTGTTCAAATCACAAAAGGTGTTTGAGTCCATGAGCTTTATGGATTTTGAAAGCTGCAAATTCTTAACTGAACTACCTAGCTTGTCTGGACTACCAAATTTGGGAGCACTATGTCTTGATAATTGCTCTAATCTAATTAGGATTCATGGCTCAATTGGATCCCTTCATAGACTCATGCTATTGAGTGCTCAAGGATGTACCCAGCTTGAAATGTTGGTACCCTACATCAATTTACCATCTCTAGAGACTCTGGATCTGAGGGGTTGCTCAAGTCTTAAAAGCTTCCCAGAAGTATTAGGAGTGATGGAGAATATAAGAGATGTTTATTTAGACCAGACTGCCTTAGATAAATTGCCATTTTCAATTGGAAATCTTGTTGGGATCCAAAGGTTGTTCTTGAGGGAATGCCAAAGGCTGATTCAGCTACCAAGTAGTATCCATATATTGCCTAAACTTGAGATAATAATGGCTTATGATTCTAGGGGATTTCGGTTATTTGAGGATAAAGAAAAAGTGAGACCAGAAGTGTTTCCAAAAGTCATGCTTGTTTATACTGAAGGCAGGGGGATCTTACTTGATGTGTGTTCTCTTGACATATGCCCCAATAATGTCATAGAAGTATGTAGACCTCCATGGAATCCCCATGGACTTGAGGGTAGTGATTTTGGATTTGTGTTCAAAGGGATTCTAGAAGGGAGAGTAAATTGGTACAAGCTTGGAAGCAAGGAATCATCTCTGTGTTTTTGGTTCAGAAAGAAATTCCCCCAGATAGCTCTATGCTGTGCTGGAGAACCTGGCATATGTAAGAACATGGTGTTGGATTTCAAGTTCAGTGTACTCATCAATGGCACTAAGCAATTCAATTCTTCATGTAACTACATATTCTCTACAGAAAGAATGACAGACCAAATACTTATGTGTGATCTACAATGCAAAGTAGAGAGGGCATTTTCAGATCATGAATGGAATGAAGTAGAGATTTTATGTGAGTTGAAATATCCCATTCCATGTGGCTCTGAAAGAGAAATGGCCACACAGGATGGGACTGCAATGATTCCAAGTTGGTCCCTCATTTATGTGTATGAAGAAAACATGGAGGATATCAAATTTCTGCCTCTAAGCCAGGAATGTAAAGAAGCACAGAGAAGAAAGGAAACACTATTCGGCTTTCACTCTATGCTCAATAGTCATGGATTGAATTGGATTGGTTTTTGA 3075 0.3912 MTHSTLPSPSSFTCDWTYDVFLSFRGVDTRNHFTGNLYNSLDQRGIHTFLDDEELRKGEEITPALHQAIQKSRIFIAVFSENYASSTHCLDELVTILDCLKAPGRLFRPVFYDVDPSQVRHQTGSYAEALAKHEERFYDDKEKVKKWRDALRQAANVSGWHFQHGSQSEYKFIGKIVEEVSEKINRTPLHVADNPVALESPVLEIASILQLGSDEGVNMLGIYGIGGIGKSTIARAVYNLIADQFEGLCFLADIRERAINHHGLSQLQETLLCEILGEKDIRVGDVYRGISIIKKRLHRKKVLLILDNVDKPKQLQVLAGGLDWFGPGSKIIITTRDNHLLATHGIERLYEVKQLNDEKALELFSWHAFKNNNIVPPAYADISKRAVCYAGGLPLALEVIGSHLFGKSLDVWKSALDKYERVLHKEIHEILKVSYDDLEEEEKGIFLDIACFFNSYEMDYVKEILYLHGFHAENGIQVLSSKSLIKIDGNGCVRMHDLIQDMGREIVRQESTLEPGKRSRLWFNDDIVHVLEENTGTDTIEAVIIDLYNDKEVQWNGKAFKKMKNLRILIIRNASFSRGPQNLPNSLRVLDWSGYPSPSLPADFKPKNLVILSLPESCLKLFKSQKVFESMSFMDFESCKFLTELPSLSGLPNLGALCLDNCSNLIRIHGSIGSLHRLMLLSAQGCTQLEMLVPYINLPSLETLDLRGCSSLKSFPEVLGVMENIRDVYLDQTALDKLPFSIGNLVGIQRLFLRECQRLIQLPSSIHILPKLEIIMAYDSRGFRLFEDKEKVRPEVFPKVMLVYTEGRGILLDVCSLDICPNNVIEVCRPPWNPHGLEGSDFGFVFKGILEGRVNWYKLGSKESSLCFWFRKKFPQIALCCAGEPGICKNMVLDFKFSVLINGTKQFNSSCNYIFSTERMTDQILMCDLQCKVERAFSDHEWNEVEILCELKYPIPCGSEREMATQDGTAMIPSWSLIYVYEENMEDIKFLPLSQECKEAQRRKETLFGFHSMLNSHGLNWIGF. 1025
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03331 1024 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Seca5g03331 1024 SMART till_3 17 157 IPR000157 GO:0007165
Seca5g03331 1024 Gene3D - 183 347 IPR027417 -
Seca5g03331 1024 SUPERFAMILY L domain-like 542 782 - -
Seca5g03331 1024 Gene3D Ribonuclease Inhibitor 531 694 IPR032675 -
Seca5g03331 1024 Gene3D Ribonuclease Inhibitor 695 782 IPR032675 -
Seca5g03331 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 775 IPR044974 GO:0006952
Seca5g03331 1024 Pfam NB-ARC domain 204 436 IPR002182 GO:0043531
Seca5g03331 1024 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Seca5g03331 1024 SUPERFAMILY "Winged helix" DNA-binding domain 425 532 IPR036390 -
Seca5g03331 1024 Gene3D - 12 182 IPR035897 -
Seca5g03331 1024 Gene3D - 354 439 IPR042197 -
Seca5g03331 1024 Pfam TIR domain 18 188 IPR000157 GO:0007165
Seca5g03331 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 449 IPR027417 -
Seca5g03331 1024 PRINTS Disease resistance protein signature 390 404 - -
Seca5g03331 1024 PRINTS Disease resistance protein signature 296 310 - -
Seca5g03331 1024 PRINTS Disease resistance protein signature 219 234 - -
Seca5g03331 1024 PRINTS Disease resistance protein signature 696 712 - -
Seca5g03331 1024 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca5g03331 Seca-Chr5 89557992 89561851 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03331 7 791 WRKY Transcription Factor Family AT4G12020 34.198 2.76e-105 360
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03331 - - mtr:11441658 1458.74