Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03320 ATGTACAAGGAGTATAGGCACAACGATGCAACAAAACTCGGTTGTGTTTCCATTGATGGGTGCTTAAAGATTCTCAAATGCATCGCTGATGATGTTATGATGTGTACTGCTTGCGGGTGTCACTGA 126 0.4286 MYKEYRHNDATKLGCVSIDGCLKILKCIADDVMMCTACGCH. 42
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03320 41 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 2 41 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03320 Seca-Chr5 89352833 89352958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03320 2 41 Zinc finger-homeobox gene family AT1G18835 40.000 2.05e-06 38.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g03320 ZF-HD_dimer 8.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03320 - - ghi:107939186 48.1358