Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03317 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATACCTGTGTCACCAATCAAAAGAAGCCCATGGGGCAGGACCATGAACTTGTGGAGCTCCTATGGCAAAATGGCCAAGTAGTATTGCACAGCCAAACACATAGGAAACCAGTTGTGAATTCAATCCCCTCAAGACAGGTTCAGAAAAATTTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTATCATGGATCCAATACCCTCTTGAGGATCCTTTGGAACAAGAATTATGTTCAAACCTTTTATCTGAACTACCACCCTGTGAAGTTGAGTCTTATAAGCAATTCAAGCAGTTTGAAGAGGGAAAGTTTTCCAAATTGGATGCTTCTAGTGCTCCCCATGTGACTGTAAGTTCACAACCACCTAACATGAAACCCTCCTTTGTTCAGGAATTCTCAGGAATTCCTATGCCTGCTCCAAGATTTCATGTTTCTGATTCATCTCAGAAAAACAATGACTTGGGTGGATCACGCAAGGTCCTAAACTTTTCTCACTTTTCAGCACTCCCTAATGTTTCTTCAGCATCTGGTAATCCACATTTTAGAGACAAAATCACTGGTAATCTTTCAAAAGGTGAGATTAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTTTTTGTGGCAGTAATCACATCCCTCAAGATCCAGATGTAAGCAGGGCTTCAAGCAATGGTGTTTGGACTACTAATTTATCTGCTGAGCCTGAAGCTGTGAGAGATGATGTCCAGAGAACAAATCCTCAGAGTGAGAAAGGGAAACCAGAGATGCTTGAACCAACTGTCACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCTACAAGAAACCAGGGCCAAAAAAGGAAAGGAATAGATGTGGAAGAATCAGAAGAACAAAGTGAGGACACAGAACTCAAATCAGCTGTTGGAAATAAGGGATCTCAGAGATCAGGGTCAGCCAGAAGGAACCGTGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGAAGAAGAGATAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAATTACAACTTCAGGTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGCATGGGAATGGCTACACCTTTTCCTCCTGTTCACAATCCTATGCAATTACCAAGAGTGCCACTTGATCAGTCCATGTCTGCTTCACAGTCACCAAACCAGACATTAATGTCCCAACCTCCTATTTTAGGTGCCTTTAATTACCAAAATCAGATACAAAATCCAGCTCTTTCAGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATATGTACAGATATGGTCCCCAGTCAGTACAACATGGTCAAACAATGATGCCACCCAGCAATAGCAGTGGAGCAGCTAATATTGATGATACTGTGAGTGGCAAAATGGGTTAA 1617 0.4174 MNNSVPDWNFGSDTCVTNQKKPMGQDHELVELLWQNGQVVLHSQTHRKPVVNSIPSRQVQKNFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQELCSNLLSELPPCEVESYKQFKQFEEGKFSKLDASSAPHVTVSSQPPNMKPSFVQEFSGIPMPAPRFHVSDSSQKNNDLGGSRKVLNFSHFSALPNVSSASGNPHFRDKITGNLSKGEIRECSVMTVGSSFCGSNHIPQDPDVSRASSNGVWTTNLSAEPEAVRDDVQRTNPQSEKGKPEMLEPTVTSSSGGSGSSLGKTCSLSTRNQGQKRKGIDVEESEEQSEDTELKSAVGNKGSQRSGSARRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMAPMMFPGIQHYMSQMGMGMATPFPPVHNPMQLPRVPLDQSMSASQSPNQTLMSQPPILGAFNYQNQIQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQSVQHGQTMMPPSNSSGAANIDDTVSGKMG. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03317 538 Gene3D - 342 403 IPR036638 GO:0046983
Seca5g03317 538 PANTHER TRANSCRIPTION FACTOR PIF3 17 506 IPR044273 GO:0003700|GO:0006355
Seca5g03317 538 MobiDBLite consensus disorder prediction 329 344 - -
Seca5g03317 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Seca5g03317 538 MobiDBLite consensus disorder prediction 345 362 - -
Seca5g03317 538 MobiDBLite consensus disorder prediction 519 538 - -
Seca5g03317 538 MobiDBLite consensus disorder prediction 282 309 - -
Seca5g03317 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 411 IPR036638 GO:0046983
Seca5g03317 538 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Seca5g03317 538 MobiDBLite consensus disorder prediction 255 362 - -
Seca5g03317 538 CDD bHLH_AtPIF_like 347 410 IPR047265 -
Seca5g03317 538 SMART finulus 353 402 IPR011598 GO:0046983
Seca5g03317 538 FunFam Basic helix-loop-helix transcription factor 342 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03317 Seca-Chr5 89275509 89281803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03317 8 530 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.000 2.24e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g03317 HLH 4.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03317 K16189 - gmx:100784531 896.345