Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03308 ATGAAGAATAATTCAAATTCAAATAGGATTAATGGCGTAAGGAAGTACCAGAAATCTGAACATCCACGCCTTCGGTGGACACCTGAGCTTCATCAATACTTTGTTCAAACTGTGGAAAGCTTAGGTGGAAAACATAAGGCAACTCCAAAGCGCATTCTGCAGATGATGCATGTGAAAGGGCTGAGGATCTCACACATTAAAAGCCATCTTCAGATGTACAGGAATATGAAGAAGGGACATACGATTCTAGAACCAATGTATGATCAGTTAATGGAAGAAAATATTGCACAAGTTAACCATCTCCCTGCAGTCTGCTCCAATTGCTCGCCCCAAAGATCAGTGGGAACAAAATTAAGAGTATCAAAACATGCTGCAAGGATTATCAATCAAGAAATTCATCCGTTAGACAATATAGGACTTTCACAAACCAGTGAAACTGATTATGATCTAAATCAGGAGCCTGATGACTCAAGTGAGTGCTTACTTAGTGACATGTCAAATGAAGAAGAAAATAGTATGACCATGAAATTTCTAGATCTCCCATTGTCTTTCAGTAACATTCCAATGATGCATGGAGACCCAGCTGAGAGAACGCGTCTTTCCTCACCAAATACAGCAGATAATAATGTTGTCGATTCTAGTTCTATACAGTCGCATGGCAGCAATTATATAAATTTAGACCTAGCTATTTGA 693 0.3882 MKNNSNSNRINGVRKYQKSEHPRLRWTPELHQYFVQTVESLGGKHKATPKRILQMMHVKGLRISHIKSHLQMYRNMKKGHTILEPMYDQLMEENIAQVNHLPAVCSNCSPQRSVGTKLRVSKHAARIINQEIHPLDNIGLSQTSETDYDLNQEPDDSSECLLSDMSNEEENSMTMKFLDLPLSFSNIPMMHGDPAERTRLSSPNTADNNVVDSSSIQSHGSNYINLDLAI. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03308 230 Gene3D - 21 78 - -
Seca5g03308 230 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g03308 230 SUPERFAMILY Homeodomain-like 20 78 IPR009057 -
Seca5g03308 230 MobiDBLite consensus disorder prediction 193 216 - -
Seca5g03308 230 FunFam Two-component response regulator 17 81 - -
Seca5g03308 230 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 133 IPR046955 GO:0003700
Seca5g03308 230 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 76 IPR006447 GO:0003677
Seca5g03308 230 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Seca5g03308 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Seca5g03308 230 MobiDBLite consensus disorder prediction 198 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03308 Seca-Chr5 89098665 89103290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03308 5 77 G2-like Transcription Factor Family AT1G14600 63.014 3.67e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca5g03308 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03308 - - ccaj:109790621 275.404