Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03306 ATGCACCATTTTTTGATTACTAGATTATCTTCTACTAGGAACCCCCACTTTGGTGTTCTCTGCCACAATGCATTTTCTCTTTTCTTCACTTGTCGTGCTTTATCTGTATCCAACACTAGTCACCATAAAGGTGCCTCCTTTACGGTGTTAAACCTCATCAACTCATCTGGGCTGTCCTCTGAAATGGCCCTTAAACTCTCCAAAAGGTTGCAACGGAAAAACCTAGATGGGCCAAATGCTGTGGTTGAACTTCTCAGAAACTATGGGTTCTCTGATACTCACTTGTGTAGCCTTGTAAAGAGACTGCCTGCGGTTCTTTTTGCAAAACCTGACAAGACCCTTTTGCCAAAACTCAAGTTTCTCCATTCTATTGGGGTTTCAACCACTGACCTCCCTAGAATCCTCATTCAAAACACTTCATTCTTGACAGCAAGCTTGGAGAAAAGCACCATCCCTCGTTATGAGATCATCAGGAGTCTAGTTTGCAATGATGAGGAGGTAGTTTCAACTTTGAAGCATGGGGCATGGTGCTTTCACTCTGCTGAGTTGATAAGTGATTCAGTTCTAAACATTGAGGCTTTGAGAAAGCTTGGCTTGCCTCAAGGTACTATTTCCTTCCTTGTAACCAATTTTCCTAGTGTAGCATTTATGAAGCATTCGAGTTTTGTTAAGGCTGCCAACACAGTGAAGGAAATGGGGTTTGATCCTTTGAAGTCAAATTTTGTTTTGGCACTTCAAGTAGTTGCAAAGATGAATGAAGCAATGTGGGAATCAAAACTTAAGATTTTTGAGAGATGGGGCTGGTCCAGAGATATCTGTCTTTTAGCTTTCAAAAAGTACCCCCAGTATATGATGATATCAGAAAAGAAGATTTTGAAAATAATGAACTTCTTGGTCAAGGAAGGTTTTCCCCTGGAAGACATTGCTAGCAGCCCTGGGATTCTGAACCGCAACTTGGAGAAGACATTTATCCCTAGATATACAGTGGTTAAAATTTTAAAGTCAAGGGGTTTGATAAAGAGTGATTTGAAAATAAGTACCTTTGTTTTGATTAGTGAGAAAATTTTTTTGAAGAGATATGTGACCCCGTTTCAGAAAAATTTGCCACTAATATTGGATGCATATAAAGTTCAGAAGTCAGACTGA 1146 0.3979 MHHFLITRLSSTRNPHFGVLCHNAFSLFFTCRALSVSNTSHHKGASFTVLNLINSSGLSSEMALKLSKRLQRKNLDGPNAVVELLRNYGFSDTHLCSLVKRLPAVLFAKPDKTLLPKLKFLHSIGVSTTDLPRILIQNTSFLTASLEKSTIPRYEIIRSLVCNDEEVVSTLKHGAWCFHSAELISDSVLNIEALRKLGLPQGTISFLVTNFPSVAFMKHSSFVKAANTVKEMGFDPLKSNFVLALQVVAKMNEAMWESKLKIFERWGWSRDICLLAFKKYPQYMMISEKKILKIMNFLVKEGFPLEDIASSPGILNRNLEKTFIPRYTVVKILKSRGLIKSDLKISTFVLISEKIFLKRYVTPFQKNLPLILDAYKVQKSD. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03306 381 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Seca5g03306 381 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Seca5g03306 381 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Seca5g03306 381 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Seca5g03306 381 SMART mt_12 274 304 IPR003690 GO:0003690|GO:0006355
Seca5g03306 381 Pfam mTERF 251 356 IPR003690 GO:0003690|GO:0006355
Seca5g03306 381 Pfam mTERF 83 298 IPR003690 GO:0003690|GO:0006355
Seca5g03306 381 PANTHER CGI-12 PROTEIN-RELATED 46 363 IPR003690 GO:0003690|GO:0006355
Seca5g03306 381 Gene3D Transcription termination factor 3, mitochondrial 185 368 IPR038538 -
Seca5g03306 381 Gene3D Transcription termination factor 3, mitochondrial 49 184 IPR038538 -
Seca5g03306 381 FunFam Mitochondrial transcription termination factor-like 146 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03306 Seca-Chr5 89081480 89082625 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g03306 mTERF 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03306 K15032 - gmx:106799612 484.952