Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03305 ATGGTGCCTAATTTTCTCATTGCAAGATTAACTGCATCATTCACATACTGTAAGAGTACCCAAACCCAATTGGGTTCCCTGCTGCATCACAATCACAATGCTTTCCTTTTTTTCTTCAATTCATTCACTTCAGGGGGCACCTCTTCTGATTCTGAATCAGAGAGAACCTACCACAAAGGTGACACCTTTACGATGTCTTACCTCATCAACTCTTGTGGGTTGTCCCCAAAGTTGGCTAAGGAACTCTCCAAAAGGGTGAATCTGAGAAACCCAAATGGCCCAAATGCTGTTCTTGATCTTCTCAAGAACTATGGGTTCTCCGAAACCCAGGTTATAAAGCTTTTGAAGAAACATCCATTGTTCCTTCTTGCAAAGGCTGAGAATATCCTTTTGCCTAAGTTCAAGTTCTTACATTCTATTGGGGTTTCTACCAGTGACATGCCAAAGATCCTAATTGGTAACCATTTTTTCTTGTTGAGGAGCTTGGAGAAATGCATTATCCCACGTTATGAGATCCTCAGGAGTGTAGTTAGTAATGATCAGGAAGCTGTTAGAGCTTTGAGAAGTGCCCAACGTTCTTTTACATTGTGTGATTTGGTGAACGTCTTGGTTCCAAACATTGAGGTTTTGAGACAATCTGGTGTGCCTCAAACTTCCATTTCTTTCATGATGATGAATTGTGCCACTGCAGTATATATGAAGCATTCCAGATTTGTGAAAACTGTCAAAAAAGTTGAGGAAATTGGGTGTAATCCTTTGAAAACATCTTTTGTCATGGCTGTCCAAGTGCTTTTAACTATGAGAAAAGCAGTGTGGGAATCGAGATTTAAGGTTTATGAGAGATGGGGCTGGAACCGTGAAATGACTCTTAGAGCATTTAGAAAGTTTCCCAATTTTATGAAGTTGTCAGAGGAGAATTTTACAAAGAAAATGAGTTTCCTAGTGAATGATATGGGTTGGCCATCAGAACATATTGCTGAATTTCCTCCAGCTCTGGCCTTCAACTTGGAGAAGAGGATTATCCCTAGACTCTCAGTAATTAAAATCTTGAAATCAAAAGGTCTGATTGAGAATATTTTGCACGTAGGTACCATTCTGTGTATAAATGAGGAAATTTTTTTGAAGAAATTTGTCATCAATTTTCAGCAAGATGTTCCTTTCTTACTAGATGTTTACAATGTGTTAAGCCTCATCAACTCATCTGGGCTGTCCCCTGAAATGACCCTTAAACTCTCCAAAAGGTTGCAACGGAAAACCCCAGATGGGCCAAATGCTGTGGTTGAACATCTCAGGAACTATGGTTTCTCTGATACCCAGTTATCTAGCCTTGTAAAGAAACTTCCTTTGGTGCTTTTAGCAAAACCTGACAAGACCCTTTTGCCAAAACTCAAGTTTCTCCATTCTATTGGGGTTTCAACCACTGACTTCCCTAGAATCCTCCTTGGAAACACTTCATTATTGACAGCAAGCTTGAAGAAAACCCTCATCCCTCATTATGAGATCATTAGGAGTATAGTTCGCAATGATAAGGAGGTAGTTACAATTTTGAAGCGTGGGCTATGGCACTTTAACTCACCTAAGGTCCTAAGTGAAGCAGTTCCTAACATAGAGGTTTTGAGACAGCTTGGCCTGCCTCAAGATTCTATTTCCCTCTTGGTAACCAATTTTCCTAGTGTAGCATTTATGAAGCATTCCGGATTTGTTGAGGCTGTCAACACAGTGAAGGAAATGGGGTTTGATCCTTTGAAGTCAAATTTTGTTTTGGCACTTCAAGTAGTTGCAAAGATGAATAAAGCAACGTTGAAATCGAAATTAGAGTTCTTTGAGAGATGGGGATGGTCCAAAGATATCTGTCATTTAGCTTTTAAAAAATATCCCCAGTATATTATGATATCAGAAAAGAAGATTTTGAAAGCACTAACCTTCTTGATGAAGGAAGGTTTTCCCCTTGAAGACATTGCTAGAAGCCCTGGGATTCTGAACCGCAACTTGGAGAAGACATTGATCCCTAGATGTACAGTTGTTAAAATTTTGAAGTCAAGGGGTTTGATAAAGAGTGATTTGCGCACATGTACCTTTATTTGCATTAGTGAGAAAATATTTTTGGAGAGATATGTGACCCGGTTCCAGAAAAATGTACCACGATTATTGGATGCGTATAAAGGTCAGAAGTTAGATTGA 2181 0.3934 MVPNFLIARLTASFTYCKSTQTQLGSLLHHNHNAFLFFFNSFTSGGTSSDSESERTYHKGDTFTMSYLINSCGLSPKLAKELSKRVNLRNPNGPNAVLDLLKNYGFSETQVIKLLKKHPLFLLAKAENILLPKFKFLHSIGVSTSDMPKILIGNHFFLLRSLEKCIIPRYEILRSVVSNDQEAVRALRSAQRSFTLCDLVNVLVPNIEVLRQSGVPQTSISFMMMNCATAVYMKHSRFVKTVKKVEEIGCNPLKTSFVMAVQVLLTMRKAVWESRFKVYERWGWNREMTLRAFRKFPNFMKLSEENFTKKMSFLVNDMGWPSEHIAEFPPALAFNLEKRIIPRLSVIKILKSKGLIENILHVGTILCINEEIFLKKFVINFQQDVPFLLDVYNVLSLINSSGLSPEMTLKLSKRLQRKTPDGPNAVVEHLRNYGFSDTQLSSLVKKLPLVLLAKPDKTLLPKLKFLHSIGVSTTDFPRILLGNTSLLTASLKKTLIPHYEIIRSIVRNDKEVVTILKRGLWHFNSPKVLSEAVPNIEVLRQLGLPQDSISLLVTNFPSVAFMKHSGFVEAVNTVKEMGFDPLKSNFVLALQVVAKMNKATLKSKLEFFERWGWSKDICHLAFKKYPQYIMISEKKILKALTFLMKEGFPLEDIARSPGILNRNLEKTLIPRCTVVKILKSRGLIKSDLRTCTFICISEKIFLERYVTRFQKNVPRLLDAYKGQKLD. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03305 726 FunFam Mitochondrial transcription termination factor-like 162 385 - -
Seca5g03305 726 Gene3D Transcription termination factor 3, mitochondrial 168 384 IPR038538 -
Seca5g03305 726 Gene3D Transcription termination factor 3, mitochondrial 523 713 IPR038538 -
Seca5g03305 726 PANTHER CGI-12 PROTEIN-RELATED 62 379 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 Pfam mTERF 595 688 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 Pfam mTERF 269 373 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 Pfam mTERF 428 648 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 Pfam mTERF 98 309 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 650 684 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 255 285 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 112 143 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 477 508 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 441 472 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 322 356 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 550 580 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 619 649 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 148 179 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 584 614 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 SMART mt_12 290 321 IPR003690 GO:0003690|GO:0006355
Seca5g03305 726 FunFam Mitochondrial transcription termination factor-like 491 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03305 Seca-Chr5 89065453 89071496 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g03305 mTERF 5.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03305 K15032 - gmx:100786641 497.664