Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03302 ATGGGTATTGAAGATGGAGAGTTCAGCGTGAGTGTGACCAATGAAGAGGTTGTGGCAGCAGTGCTTCCAATGCAAGAGCATTGGCTACCACTCTCTAACCTTGACCTTCTCCTACCTCCAGTCGATGTGGGAGTTTTTTTCTGTTACAAGAACCCCATGAATATGATGTCTTCTTCTTCTACTACTACTACCTTATTGAGAGATCATGACACCGACAAAATAATGATCAATAAGTTTACATCTATGGTGGGGTCTCTTAAGAAGGCCTTAGCTCAGACTCTAGTTTCCTACTATGCCCTTGCAGGTGAAGTTGTGACAAATTCTATGGGTGAACCTGAGCTACTTTGCAATAATGGTGGGGTTGATTTTGTTGAAGCTGTAGCAGACGTTCAACTTCAGTGCCTCAACTTCTCTAATCCAGATGACTCCTTTGAAGGAAAGCTTGTTCCCAAGAAGAAGCGTGGCGTGCTTGCTGTTCAGGCAACTTTATTAAAATGTGGTGGAATAATAGTGGCATGCACATTTGATCATCGCATAGCAGATGCGTATTCAACAAACATGTTTCTTGTATCATGGGCCGAGATGGCCCAACCCATGAAGCCCACAACCATCACTTACCCACCATGTTTCCGTCGCTCCCTCCTTAGCCCCCGTCGTCCAAGTTCGATCCATCCTTCCATCCATCGCATGTATATCCCAATCTCCAACCTCCCTCCTCCGTCGGCCATCACCGCCACCCCTTTCCTCAGTCGCATATACTATGTCACGGCAGAGGACCTCCACCGCATTCAATCACTTGCCTCCACCACAGACAATGATGGTACTAAGCGCACAAAGCTCGAGTCTTTATCTGCTTTCTTATGGAAAATGGTCGCTCGTGCAGCTTCAGCTTCAAGTAGTGGCAAAAGGGTCATTGCCAAAATGGGCATAGTTGTTGATGGAAGGAAAAGACTCAACAATGGTGATAAAGGAAAAGGAGTAATGATGACTTGCTATTTTGGGAATGTGCTTTCCATACCATTTGGTGAGAAACCAGTGGAGGAGTTAGTGGAGAAGCCATTAGGTTGGGTGGCAAATGAGGTTCATGAATTTGTGGCAACCGCGACAACAGAAGAACACTTCTTAGGTCTCATTGATTGGGTCGAAGTACACCGACCGGTCCCTGGTTTGGCAAGGATTTATTGTAGTGGTGCTAATGAGGGACCCACTTTTGTGGTGTCTTCTGGGCAAAGGTTCCCGAATGAAAAGGTTGATTTTGGGTGGGGGAAGGCTGTGTTTGCGTCATACCATTTTCCATGGGGTGGTGAAGCAGGATATGTGATGCCAATGCCAAGTCCTTTAGGAAATGGTGATTGGGTTGTATACATGCATCTTTTGAAGGGACAATTGGAAGTCATACAGTCTGAGGCTGCTCATGTCTTTAGGCCCTTAACTTGGGATTACCTTAATCAATGA 1455 0.4591 MGIEDGEFSVSVTNEEVVAAVLPMQEHWLPLSNLDLLLPPVDVGVFFCYKNPMNMMSSSSTTTTLLRDHDTDKIMINKFTSMVGSLKKALAQTLVSYYALAGEVVTNSMGEPELLCNNGGVDFVEAVADVQLQCLNFSNPDDSFEGKLVPKKKRGVLAVQATLLKCGGIIVACTFDHRIADAYSTNMFLVSWAEMAQPMKPTTITYPPCFRRSLLSPRRPSSIHPSIHRMYIPISNLPPPSAITATPFLSRIYYVTAEDLHRIQSLASTTDNDGTKRTKLESLSAFLWKMVARAASASSSGKRVIAKMGIVVDGRKRLNNGDKGKGVMMTCYFGNVLSIPFGEKPVEELVEKPLGWVANEVHEFVATATTEEHFLGLIDWVEVHRPVPGLARIYCSGANEGPTFVVSSGQRFPNEKVDFGWGKAVFASYHFPWGGEAGYVMPMPSPLGNGDWVVYMHLLKGQLEVIQSEAAHVFRPLTWDYLNQ. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03302 484 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 445 - -
Seca5g03302 484 Pfam Transferase family 83 472 - -
Seca5g03302 484 Pfam Transferase family 9 58 - -
Seca5g03302 484 Gene3D - 235 468 IPR023213 -
Seca5g03302 484 Gene3D - 5 233 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03302 Seca-Chr5 89044363 89048748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03302 86 467 Monolignol Biosynthesis Gene Families AT5G48930 26.485 1.26e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03302 - - gmx:100785067 690.263