Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03296 ATGGTGGTGAAGGTGTATGGCCCGACCTACGGTTGTCCCAAAAGGGTGCTCGTGTGTCTGATCGAGAAGCAAATTGAGTTTGAAACAGTTGATGTCGACCTCTTCAAGGGAGAGCACAAGGAACCTGAATTCCTCAACCTCCAGCCTTTTGGAATGCTTCCAGTTATTCAAGATGGTGATTATACTCTCTATGAATCTCGTGCAATAATCAGATACTATGCAGAGAAGTATAAAGACCAAGGAACTGACTTGTTGGGAAAGACAACAGAAGAAAGGGGTCTTGTGGAGCAATGGCTTGAAGTGGAAGCCCAGAACTTTCATCCACTAATCTACAACTTGGTTATTAATGTTCTGTTTGCCCCATTAATGGGTGTTCCCTCAGACACAAAACTGATTGAAGATTGTGATGAGAAGCTGAAGAAGGTGCTGGATATCTATGAGGAGAGGCTGTCAAAGACCAAGTACCTGGCTGGGGATTTCTTCAGCCTTGCTGATCTTAGCCATCTCCCATTTGGTCACTATTTGGTGAATCAAACAGGGAGAGGGAATATAGTGAGAGAGAGGAAACATGTGAGTGCTTGGTGGGATGATATTAGCAATAGTTCTCCGAAAAGGGTGCTCGTGTGTCTGATCGAGAAGCAAATTGAGTTTGAAACAGTGGATATCGACCTCTTCAAGGGAGAGCATAAGGAACCTGAGTTCCTCAAGCTCCAGCCTTTTGGAGTGCTTCCAGTTATTCAAGATGGTGATTATACTCTCTATGAATCTCGTGCAATAATCAGATACTATGCAGAGAAGTTTAAAGACCAAGGAACTGACTTGTTGGGAAAGACAATAGAAGAGAGGGGTCTTGTGGAGCAATGGCTTGAAGTGGAATCCCAGAACTTTCATCCACTAATCTACAACTTGGTTATGAATGTTCTGTTTGCCCCATTAATGGGTGTTCCCTCGGACACAAAACTGATTGAAGAGAGTGATGAGAAGCTTAAGAAGGTGCTGGATATCTATGAGGAGAGGCTGTCAAAGACCAAGTACTTGGCTGGACATTTCTTCAGCCTTGCTGATCTTAGCCATCTCCCATTTGGTCACTATTTGGTGAATCAAACAGGGAGAGGGAATTTAGTGAGAGAGAGGAAACATGTGAGTGCTTGGTGGGATGATATTAGCAATAGGCCATCTTGGAAGAAGGTTCTGGAGCTATACAAATACCCTGTCTAG 1218 0.4384 MVVKVYGPTYGCPKRVLVCLIEKQIEFETVDVDLFKGEHKEPEFLNLQPFGMLPVIQDGDYTLYESRAIIRYYAEKYKDQGTDLLGKTTEERGLVEQWLEVEAQNFHPLIYNLVINVLFAPLMGVPSDTKLIEDCDEKLKKVLDIYEERLSKTKYLAGDFFSLADLSHLPFGHYLVNQTGRGNIVRERKHVSAWWDDISNSSPKRVLVCLIEKQIEFETVDIDLFKGEHKEPEFLKLQPFGVLPVIQDGDYTLYESRAIIRYYAEKFKDQGTDLLGKTIEERGLVEQWLEVESQNFHPLIYNLVMNVLFAPLMGVPSDTKLIEESDEKLKKVLDIYEERLSKTKYLAGHFFSLADLSHLPFGHYLVNQTGRGNLVRERKHVSAWWDDISNRPSWKKVLELYKYPV. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03296 405 SFLD Glutathione Transferase (cytosolic) 11 200 IPR040079 -
Seca5g03296 405 SFLD Glutathione Transferase (cytosolic) 199 391 IPR040079 -
Seca5g03296 405 CDD GST_N_Phi 2 76 - -
Seca5g03296 405 FunFam Glutathione S-transferase F2 195 275 - -
Seca5g03296 405 Pfam Glutathione S-transferase, C-terminal domain 302 392 IPR004046 -
Seca5g03296 405 Pfam Glutathione S-transferase, C-terminal domain 113 200 IPR004046 -
Seca5g03296 405 Gene3D Glutaredoxin 1 85 - -
Seca5g03296 405 Pfam Glutathione S-transferase, N-terminal domain 12 74 IPR004045 -
Seca5g03296 405 Pfam Glutathione S-transferase, N-terminal domain 195 264 IPR004045 -
Seca5g03296 405 Gene3D - 276 398 - -
Seca5g03296 405 Gene3D - 86 201 - -
Seca5g03296 405 SFLD Main (cytGST) 199 391 - -
Seca5g03296 405 SFLD Main (cytGST) 11 200 - -
Seca5g03296 405 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 81 IPR004045 -
Seca5g03296 405 CDD GST_C_Phi 90 199 IPR034347 -
Seca5g03296 405 CDD GST_N_Phi 202 266 - -
Seca5g03296 405 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 190 271 IPR004045 -
Seca5g03296 405 SUPERFAMILY GST C-terminal domain-like 271 399 IPR036282 -
Seca5g03296 405 SUPERFAMILY Thioredoxin-like 3 81 IPR036249 -
Seca5g03296 405 CDD GST_C_Phi 280 398 IPR034347 -
Seca5g03296 405 SUPERFAMILY Thioredoxin-like 201 271 IPR036249 -
Seca5g03296 405 FunFam Glutathione S-transferase F2 2 85 - -
Seca5g03296 405 PANTHER GLUTATHIONE S-TRANSFERASE RHO 204 400 - -
Seca5g03296 405 Gene3D Glutaredoxin 202 268 - -
Seca5g03296 405 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 234 IPR010987 -
Seca5g03296 405 FunFam Glutathione S-transferase F2 86 207 - -
Seca5g03296 405 SUPERFAMILY GST C-terminal domain-like 78 200 IPR036282 -
Seca5g03296 405 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 278 405 IPR010987 -
Seca5g03296 405 FunFam Glutathione S-transferase F2 276 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03296 Seca-Chr5 88976562 88985852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03296 201 405 Glutathione S-transferase Gene Family AT2G30870 60.000 3.49e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03296 K00799 - gmx:100499911 375.941