Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03294 ATGGAGGATGTGACTAAAGTACATGGCTCTGATGATAAGAAAGAGGAAGAAGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCCACAGATGAAGAGCTTGTTGGGTTTTATCTGCAGAGAAAAGTGGAGAAGAAGCCTCTTCGAATTGAACTCATTAAACAAGTTGACATCTACAAATACGACCCATGGGATCTTCCAAAAGTGAACTCTTTGGGGGAGAAGGAGAAGGAGAAGGAATGGTACTTTTTCTGTATAAGAGGGAGAAAATACAAGAACAGCATAAGGCCAAACAGGGTAACAAGGTCAGGGTTCTGGAAAGCCACAGGGATTGACAAGTCCATATATTGTGTGAAAGAACCTCATCAATGCATTGGCCTCAAGAAGTCATTGGTTTACTACAGAGGAAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCCAATGCTAATTCTATCAATGACGTTCAACAAGCTGTAAGTCAATTATCTACACATGAGGTGTGGACACTATGCAGGATATTCAAACGCATCCCATCTTACAAAAAGTACACTCCAAATTTGAAAGACTCAGCACCATCTCTCACCAAATTACCACCAGATAATTCTAATACATGCAGCTTAGACTCTGACAATTGCAACCCATACTTGAATATTTCCAGAGACCCTTTATTGATGAAACAAATTGAATGGAAACCCCTTATTGAAGATGAAAAGAAACACTTGTTTCTAGGCCAATTTGGATCTCATCAGGCTCCATCAACCCTGTCTTACCCTAATTGTTGGAATCAGAATGTTGTTGAGGATGCAACAATATTTGCAAATAACAACTGGGATGACCTAAGATCTGTGGTTCAGTTTGCCATTGATCCATCCACCGTTTATGATTGTACAGAGACACATATACCACCCTTTTTTTCTTAG 942 0.4045 MEDVTKVHGSDDKKEEEEVVLPGFRFHPTDEELVGFYLQRKVEKKPLRIELIKQVDIYKYDPWDLPKVNSLGEKEKEKEWYFFCIRGRKYKNSIRPNRVTRSGFWKATGIDKSIYCVKEPHQCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNANSINDVQQAVSQLSTHEVWTLCRIFKRIPSYKKYTPNLKDSAPSLTKLPPDNSNTCSLDSDNCNPYLNISRDPLLMKQIEWKPLIEDEKKHLFLGQFGSHQAPSTLSYPNCWNQNVVEDATIFANNNWDDLRSVVQFAIDPSTVYDCTETHIPPFFS. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03294 313 Pfam No apical meristem (NAM) protein 22 152 IPR003441 GO:0003677|GO:0006355
Seca5g03294 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 224 - -
Seca5g03294 313 FunFam NAC domain-containing protein 35 29 186 - -
Seca5g03294 313 Gene3D NAC domain 29 186 IPR036093 GO:0003677|GO:0006355
Seca5g03294 313 ProSiteProfiles NAC domain profile. 20 183 IPR003441 GO:0003677|GO:0006355
Seca5g03294 313 SUPERFAMILY NAC domain 19 182 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03294 Seca-Chr5 88929722 88934054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03294 10 183 NAC Transcription Factor Family AT5G39820 57.754 4.41e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g03294 NAM 4.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03294 - - gmx:100819795 495.738