Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03291 ATGGGAACCTACATGGAAAATTTCACAGCTGAGGAGGAACACATTTTCCGTAGCCAATATTCACCAGTTCCCATTCCTGACAATGTGACATTACCAGAATTTGTGCTCCAACATGCTGAATTATATGCTGATAAGGTTGCATTTGTGGATGCTGTGACTGGAAAAGGGATCACTTATAATGAGGTTGTGAGGGACACACAAAGGTTTTCAAAGGCCTTAAGATCTCTTGGTTTGAGAAAAGGGCAAGTTGTGATTGTAGTACTTCCAAATGTAGTAGAGTATGCTATTGTTGTTTTGGGGATAATGGCTGCTGGTGGGGTGTTCTCAGGGGCAAATCCAGCATCACATGTATCAGAAATTAAGAAGCAGGCAGAGTCTGCTGATGCTAAATTAATTGTCACAAATAGCACAAATTATGAAAAGGTGAAAGGTCTAGAGCTACCTATTATTGTGCTGGGAGATGAACATGTTGGAGATGCTATGAATTGGAACAAATTGCTTGAAGCAGCAGACAGGGCAGGTGATAATGTGATGAAGGAACCTATTCAACAGAATGATCTTTGTGCCATGCCTTTCTCATCTGGCACCACAGGAATGTCCAAGGGTGTGATGCTTACACACAGAAATCTAGTAGCTAATCTTTGCTCAACACTCTTTGGTGTAGGGCCAGAAATGATTGGTCAAGTCACCACACTAGGCTTAATTCCCTTCTTTCACATTTATGGGATCACTGGCATATGTTGTGCCACTCTTAGAAGTAAAGGGAAAGTTGTGGTTATGGGAAGATTTGAGTTGAAAACATTTCTCAATGCCTTAATCACACATGAGGTCACATTTGCACCTATTGTGCCACCAATCATTCTTGGCTTGGTAAAAAATCCCATAGTGGATGAATTTGATCTCGCCAAGCTTAAACTCCAGGCTATTATGACTGCAGCAGCACCACTTGCACCAGAACTCCTTGTTGCCTTTGAACACAAGTTCCCTGGTGTTGTTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTCACACATGCACAAAATGGATTGAGGAATCCGCATAAAAATTCAGTGGGGTTCATCCTTCCAAATTTGGAAGTCAAGTTTGTTGATCCTGATACAGGTAAATCCCTCCCAAGGAACACACCAGGGGAACTATGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTGGATGAGACTGCTCAAACCATTGACAAAAATGGATGGCTTCACACTGGTGACATAGGATTCATTGATGATGAAGAAAATGTTTTTATTGTTGATCGTATCAAGGAGTTGATTAAATACAAAGGTTTCCAAGTTGCTCCTGCAGAGTTAGAGGCTATTTTGTTGTCTCATTCCTCAGTGGAAGATGCAGCAGTTGTATCATTACCAGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGTGCCCAGGTGCAAGAGAGTGTGAAGAGGACATTATGAACTATGTTGCTTCCAATGCTGCTCATTACAAGAAAGTGCGAGTAGTGCATTTTGTGGAAGCCATACCAAAATCACCTTCAGGAAAAATAATGAGAAGGCTTATCAAAGAGAGGATGGTGGAAAAGATGAAGGCCAATTCCATAACAAAATCTAGCACTTTCTAA 1662 0.4158 MGTYMENFTAEEEHIFRSQYSPVPIPDNVTLPEFVLQHAELYADKVAFVDAVTGKGITYNEVVRDTQRFSKALRSLGLRKGQVVIVVLPNVVEYAIVVLGIMAAGGVFSGANPASHVSEIKKQAESADAKLIVTNSTNYEKVKGLELPIIVLGDEHVGDAMNWNKLLEAADRAGDNVMKEPIQQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVGPEMIGQVTTLGLIPFFHIYGITGICCATLRSKGKVVVMGRFELKTFLNALITHEVTFAPIVPPIILGLVKNPIVDEFDLAKLKLQAIMTAAAPLAPELLVAFEHKFPGVVVQEAYGLTEHSCITLTHAQNGLRNPHKNSVGFILPNLEVKFVDPDTGKSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVSLPDEEAGEIPAASVVLCPGARECEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLIKERMVEKMKANSITKSSTF. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03291 553 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Seca5g03291 553 Gene3D - 440 543 IPR045851 -
Seca5g03291 553 Pfam AMP-binding enzyme 37 444 IPR000873 -
Seca5g03291 553 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Seca5g03291 553 SUPERFAMILY Acetyl-CoA synthetase-like 16 540 - -
Seca5g03291 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - -
Seca5g03291 553 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Seca5g03291 553 Gene3D - 13 439 IPR042099 -
Seca5g03291 553 CDD 4CL 25 532 - -
Seca5g03291 553 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03291 Seca-Chr5 88885590 88888085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03291 5 539 Monolignol Biosynthesis Gene Families AT1G62940 72.491 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03291 K01904 - gmx:100811418 979.163