Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03284 ATGGTTACCTTCAGGTATCACCAGTACCAGGTTGTGGGGAGAGCTCTTCCTACTGAAAAAGATGAGCATCCTAAGATCTACAGGATGAAGCTTTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTATGTCACAACCTTCACATTTTGTTTCCCTTTAAGCCTTAACCCTATAATGTACTTCTTGAGAAAGCTAAAGAAGGTCAAGAAAAGCAATGGGCAAGTGCTAGCTATCAACGAGATTTTTGAGAAAAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAGTACCGAGATACTACTCTAAATGGTGCTGTTGAACAAATGTACAATGAAATGGCATCTCGTCATAGAGTCAGGAGTCCATGCATCCAGATCATTAAGACTGCCACCATCCCAGCTAAACTCTGCAAAAGGGAGAGCACCAAGCAGTTCCATGACTCTAAAATAAAGTTCCCATTGGTGTTCAAGAAGATTAGGCCCCCAACTAGGAAGCTCAAGACAACATACAAGGCATCCAGGCCCAACCTGTTTATGTAA 588 0.4286 MVTFRYHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYVTTFTFCFPLSLNPIMYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKIRPPTRKLKTTYKASRPNLFM. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03284 195 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 145 IPR023573 GO:0003735|GO:0005840|GO:0006412
Seca5g03284 195 Gene3D - 58 88 - -
Seca5g03284 195 FunFam 60S ribosomal protein L18a 89 164 - -
Seca5g03284 195 Gene3D - 1 50 - -
Seca5g03284 195 PANTHER 60S RIBOSOMAL PROTEIN L18A 4 46 IPR028877 -
Seca5g03284 195 PIRSF Ribosomal_L18a 1 50 IPR021138 GO:0003735|GO:0005840|GO:0006412
Seca5g03284 195 PIRSF Ribosomal_L18a 57 195 IPR021138 GO:0003735|GO:0005840|GO:0006412
Seca5g03284 195 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 86 IPR028877 -
Seca5g03284 195 SUPERFAMILY RplX-like 88 163 - -
Seca5g03284 195 Gene3D - 89 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03284 Seca-Chr5 88755699 88757357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03284 1 195 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 82.051 1.84e-117 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03284 K02882 K22683 tcc:18596518 351.288