Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03283 ATGAAGCTTTGGGCCACCAATGAGGTCCGTGCCAAATCTAAGTTCTGGTACTTCTTGAGAAAGCTAAAGAAGGTCAAGAAAAGCAATGGGCAAGTGCTGGCCATCAACGAGATTTTTGAGAAAAATCCTACCAAGATTAAGAATTATGGAATTTGGCTCCGTTATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATACCGTGACACTACTCTAAATGGTGCTATTGAACAAATGTACAATGAAATGGCATCACGTCATAGAGTCAGGAATCCATGCATCCAGATCATTAAGACTGCCACCATCCCAGCTAAACTTTGCAAAAGGGAGAGCACCAAGCAGTTCCACGACTCTAAAATCAAGTTCCCATTGGTGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTCAAGACAACATACAAGGCATCCAGGCCCAACCTGTTTATGTAA 453 0.4327 MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAIEQMYNEMASRHRVRNPCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03283 150 Hamap 50S ribosomal protein L18Ae [rpl18a]. 1 41 IPR028877 -
Seca5g03283 150 FunFam 60S ribosomal protein L18a 44 119 - -
Seca5g03283 150 SUPERFAMILY RplX-like 43 118 - -
Seca5g03283 150 Gene3D - 44 119 - -
Seca5g03283 150 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 1 100 IPR023573 GO:0003735|GO:0005840|GO:0006412
Seca5g03283 150 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 149 IPR028877 -
Seca5g03283 150 PIRSF Ribosomal_L18a 1 150 IPR021138 GO:0003735|GO:0005840|GO:0006412
Seca5g03283 150 Gene3D - 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03283 Seca-Chr5 88748148 88749820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03283 1 150 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.333 2.84e-103 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03283 K02882 K22683 pop:7468726 305.834