Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03267 ATGTCAACCAACAGTTCTTTGCATGTTGAATTGTCAAAGAAGACTTCATTTTTGGGTTTGAGGTTGTGGGTTTTGATTGGGATAGGTGTTGGTGCATTTATAGTTCTGATTCTTTGTATGTTATCGATATGGGTGATGTTTCGGAGAAAGTCTAGGAGGTCTGTGGACAAGTACTCTTTATCCCAAATACCACATGTCTCAAAGGATATCAAAGTTGACAAGGTTGGGGTGCAGACTTCTCATGATCAAGTAGAAAGTGTATCTATTCCTGTTCATGACAAGGCAAGTGATAAGAATTCAGATAAGTTGTTAGTTCATTTGGGCATGAACAAATCCAGTGATCATGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGGTTTAGTTCAATGTCAGGAGAAGAAGGAAGCTCTGGAACTGTTAGGAAGCAATCTACATTGTCATTTGGTGGGATGGTAACTGCATCTCCTCTAATTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAACTTGCAACTAATCGTTTCTCTGCAGAGAATGTGATTGGTGAAGGTGGATATGGAGTTGTTTACAGGGGCAGACTGATCAATGGATCTGAGGTGGCAGTGAAGAAACTTCTTAATAACTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAAAATCTTGTGCGCTTACTTGGATATTGCATAGAAGGAGTTCACAGGTTGCTGGTGTATGAATATGTGAATAATGGTAACTTAGAACAATGGTTACATGGGGCTATGAGCCAGCATGGGACACTTACATGGGAAGCTCGCATGAAAGTTTTACTTGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGAGATATAAAGTCTAGTAACATATTGATTGATAATGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACCAGAGTAATGGGAACATTTGGCTATGTGGCACCAGAATATGCTAATACTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCGGTTACTGGAAGGGACCCTGTAGACTATACGCGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGGAAGTTGTGGACTCGAGCCTTGAAGTGAAACCATCAACCCGTGCTTTAAAGCGTGCCCTTCTGGTTGCACTTAGGTGTGTTGATCCTGATGCAGAAAAGAGACCCAAAATGAGTCAGGTTGTGAGGATGCTCGAAGCTGATGAATATCCATTCCGAGAGGATCGAAGGAATAGAAAGAGCCGCACCGCCAGCATGGAAATCGAATCCCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGGTGAAGGGTTCTGAAGGCCATGTACCTGATGATACTACAACTCAAGGGTCTTAG 1542 0.4241 MSTNSSLHVELSKKTSFLGLRLWVLIGIGVGAFIVLILCMLSIWVMFRRKSRRSVDKYSLSQIPHVSKDIKVDKVGVQTSHDQVESVSIPVHDKASDKNSDKLLVHLGMNKSSDHDNISQCSSIYHHERGFSSMSGEEGSSGTVRKQSTLSFGGMVTASPLIGLPEISHLGWGHWFTLRDLELATNRFSAENVIGEGGYGVVYRGRLINGSEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGAMSQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDNEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYTRPANEVNLVEWLKMMVGTRRAEEVVDSSLEVKPSTRALKRALLVALRCVDPDAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKVKGSEGHVPDDTTTQGS. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03267 513 CDD STKc_IRAK 194 460 - -
Seca5g03267 513 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03267 513 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Seca5g03267 513 Coils Coil 208 228 - -
Seca5g03267 513 PANTHER OS01G0323000 PROTEIN 1 482 - -
Seca5g03267 513 FunFam Putative receptor-like protein kinase 170 263 - -
Seca5g03267 513 MobiDBLite consensus disorder prediction 466 513 - -
Seca5g03267 513 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Seca5g03267 513 MobiDBLite consensus disorder prediction 466 481 - -
Seca5g03267 513 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03267 513 FunFam Putative receptor-like serine/threonine-protein kinase 264 474 - -
Seca5g03267 513 MobiDBLite consensus disorder prediction 488 503 - -
Seca5g03267 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Seca5g03267 513 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03267 513 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Seca5g03267 513 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03267 Seca-Chr5 88524927 88530103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03267 19 462 Trihelix Transcription Factor Family AT1G70460 39.556 2.16e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca5g03267 Pkinase 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03267 - - gmx:100813931 914.064