Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03254 ATGGTGTTGCAGGCCCAACTGAGATTCCGCCCCTTAATATTCCAAAAAAAGTGGGAAGCAGTGCATGGGGAATACCGCGGGCAGCTGATGTATTGCACGGTTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCTCATGAAAAGTTGTCGATGTGCAGTAAATTTGACTGATTCTGAACAATATGATCAACCGGTTGATGATAACTTGCTATCATTAGATAAAGTTCACGGAGAGGATGAGGGACATGATCCTTTTGATGATTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGAATAATGGATGATTTTGACCTAAGTAGGCTGCCCAGCCAAATTGAGGATTTGGATGAAAATGATCTGTTTGTCAACGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGCCTTAGCATTGGTATGTCAAAGATGAGCATATCAGATGGAGTTGCTTCCAATGGCATTGGGCATTATGCAATCCCGAATGGCGTGGGAACAGTGGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGCAATGTTGAGGACTCTGAATTACGAGCACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCGTCGGAAAAAGATATAAACCAAGGAACACTTGTAGTGTTCAATTTAGATCCCTCAGTATCAAATGATGATCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGAGAAACACCTCATAAGAGACACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCCCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGGGCACGTAGAAACTTGATGCAACAATTGAGTCAAGAATTGGAACAAGATGAAGCTCGAACTTTTAGGCATCAAGTAGGTTCACCTTTGGCCAATTCTCCTCCAGGTAACTGGGCACAATTTGGTAGTCCAATTGAACACAGTCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGCCCTATTAATACCAACCACTTGTCTGGATTGGCTGCAATTCTTTCTCCACATGCATCAACCTCTACCAAGATTGCACCAATTGGCAAGGACCCTGGAAGGGTTTCAAATCAGATGTTTGCCAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAGCAAAAAGTAAATGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAACTTCAAGTTCATCAAGTATTGGAACACTTTCTGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCAGAGCATTCAAACACATCTGCCTGGTCTTCATCTTCTGTGGGACATCCATTTACATCTAGTAGCCAAAGGCAGGGTTTCCCATATACTAGTCATCGCAGTCCTTTTCTTGGCTCCCAGCAACATCATCATGTTGGATCTGCTCCATCTGGCCTTCCTATTGATAGGCATTTTAGCTACTTCCCAGAGTCACCTGATGCTTCTCTCATGAGCCCAGTTGCATTTGGGAATTTAAATCACAGTGATGGAAATTTTATGGTGAACATGGCTGCTCGTGCATCTGTAGGAGTTGGTGTTGGCCTTTCAGGAACTACCACTGAAATTAGTTCACCTAATTTCCGAATGATGTCACTGCCTAGGCATGGTTCATTGTTCCTTGGGAATGGTTCATATTCTGGACTAGGAGCAACTAACATTGAGGCATTAGCTGAACGTGGACGAAGTAGGCGACCTGACAATAATGGGAACCAAATTGATAGCAAGAAGCTGTACCAGCTTGATCTAGACAAAATCGTCAACGGTGACGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAAAATCACCGGGGGACTTATGACTTCCTCTATTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATACCCTTCTATAAGGCATTTAACGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTAGCATATGCACGAATACAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAACGAGGACAAGCGGTGCCGACCTATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGAACAGGAACATTTTCTATCCAGCAACTTGAATATATGCATTCGGCAACCAGATGGGTCTTACTCAAGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATGAGAGGCTAGAGAAAGATTAA 2550 0.4235 MVLQAQLRFRPLIFQKKWEAVHGEYRGQLMYCTVQVMLACFLVHCLFFLMKSCRCAVNLTDSEQYDQPVDDNLLSLDKVHGEDEGHDPFDDFETNAIGNMLPDDEEELLAGIMDDFDLSRLPSQIEDLDENDLFVNGGGFEMDFEPQESLSIGMSKMSISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPLANSPPGNWAQFGSPIEHSPLGSFSKSPGLGHASPINTNHLSGLAAILSPHASTSTKIAPIGKDPGRVSNQMFANSGSTQGAAFQHSMSFPEQKVNASPRPISTFGESTSSSSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGHPFTSSSQRQGFPYTSHRSPFLGSQQHHHVGSAPSGLPIDRHFSYFPESPDASLMSPVAFGNLNHSDGNFMVNMAARASVGVGVGLSGTTTEISSPNFRMMSLPRHGSLFLGNGSYSGLGATNIEALAERGRSRRPDNNGNQIDSKKLYQLDLDKIVNGDDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGEQEHFLSSNLNICIRQPDGSYSSDLLESPKGNLDERLEKD. 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03254 849 Gene3D - 181 275 IPR012677 -
Seca5g03254 849 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 258 IPR000504 GO:0003723
Seca5g03254 849 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 344 IPR000504 GO:0003723
Seca5g03254 849 PANTHER RNA RECOGNITION MOTIF-CONTAINING 133 820 - -
Seca5g03254 849 MobiDBLite consensus disorder prediction 515 560 - -
Seca5g03254 849 CDD RRM1_MEI2_like 191 267 IPR034453 -
Seca5g03254 849 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 265 IPR000504 GO:0003723
Seca5g03254 849 SUPERFAMILY RNA-binding domain, RBD 691 776 IPR035979 GO:0003676
Seca5g03254 849 FunFam MEI2-like protein 5 isoform 2 181 275 - -
Seca5g03254 849 Pfam RNA recognition motif 2 689 785 IPR007201 -
Seca5g03254 849 FunFam Protein MEI2-like 1 276 371 - -
Seca5g03254 849 CDD RRM3_MEI2_like 692 777 IPR034454 -
Seca5g03254 849 Gene3D - 276 374 IPR012677 -
Seca5g03254 849 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 350 IPR000504 GO:0003723
Seca5g03254 849 MobiDBLite consensus disorder prediction 471 495 - -
Seca5g03254 849 MobiDBLite consensus disorder prediction 515 557 - -
Seca5g03254 849 SUPERFAMILY RNA-binding domain, RBD 189 352 IPR035979 GO:0003676
Seca5g03254 849 CDD RRM2_MEI2_like 276 346 - -
Seca5g03254 849 SMART rrm1_1 193 261 IPR000504 GO:0003723
Seca5g03254 849 SMART rrm1_1 278 346 IPR000504 GO:0003723
Seca5g03254 849 SMART rrm1_1 691 767 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03254 Seca-Chr5 88265127 88273928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03254 187 385 Eukaryotic Initiation Factors Gene Family AT1G71770 25.333 1.17e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03254 - - gmx:100812324 1456.43