Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03243 ATGGAGCTTCCAAATCAAGCACAAGAAGGATCTTCTTCTCAGAAGAAAATGGGAAGAGGGAAAATTGAAATCAAGCGGATCGAGAACACTACCAATAGGCAAGTCACCTTCTGCAAACGCCGCAACGGTTTGCTGAAAAAAGCTTATGAATTATCTGTTCTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAACCCGTGGCCGCTTGTATGAGTATGCCAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCCTCAAATGCCGAATCTGTATCTGAAGCTAATACACAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAGATTCGAGATATTCAGAATCTAAATAGGCACATCCTTGGTGAAGCTCTTGGCTCTCTGAGTCTCAAAGAACTAAAGAATCTCGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATATCGAGTTCATGCAAAAACGGGTACTCATCAGTATCTCTTCTTCGCCGTTATTAATTTCTGCTTTACTTGTTTCCTTATATATCATATATATATTCAGAGCTACCATATAG 606 0.3944 MELPNQAQEGSSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASSNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKRVLISISSSPLLISALLVSLYIIYIFRATI. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03243 201 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Seca5g03243 201 MobiDBLite consensus disorder prediction 1 15 - -
Seca5g03243 201 Coils Coil 137 157 - -
Seca5g03243 201 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Seca5g03243 201 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Seca5g03243 201 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g03243 201 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Seca5g03243 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 160 - -
Seca5g03243 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Seca5g03243 201 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Seca5g03243 201 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Seca5g03243 201 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Seca5g03243 201 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Seca5g03243 201 ProSiteProfiles K-box domain profile. 103 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g03243 201 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Seca5g03243 201 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Seca5g03243 201 Coils Coil 106 126 - -
Seca5g03243 201 Pfam K-box region 101 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03243 Seca-Chr5 88129059 88135343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03243 7 173 MADS-box Gene Family AT2G42830 82.635 8.48e-101 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca5g03243 K-box 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03243 K09264 - gmx:100808734 300.827