Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03241 ATGGCTGCAAGCTTTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGTTCAGTGGATTAAGCAACAGCTCCCCAGGTTTATTTACCACATCACATGAGATGACATGCAACAGTTATTTTTCTCAGCAGCAGCAACGCACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTAGACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCACTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCAGTGAAGGAAGCCCATCCTAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGGGTAGTTGTGCGCGCAGCAATGCAAAAGGGAAGATGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAGCCTATTGGGACCAGAGTTTTTGGGCCAGTGCCTCATGAGCTGAGGCAGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCATAA 504 0.4643 MAASFASRCSRVGRSLFSGLSNSSPGLFTTSHEMTCNSYFSQQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03241 167 FunFam 50S ribosomal protein HLP, mitochondrial-like 48 167 - -
Seca5g03241 167 SUPERFAMILY Ribosomal protein L14 49 166 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca5g03241 167 Hamap 50S ribosomal protein L14 [rplN]. 48 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca5g03241 167 Pfam Ribosomal protein L14p/L23e 49 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca5g03241 167 ProSitePatterns Ribosomal protein L14 signature. 105 131 IPR019972 -
Seca5g03241 167 SMART Ribosomal_L14_2 48 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca5g03241 167 NCBIfam 50S ribosomal protein L14 49 166 IPR005745 GO:0003735|GO:0006412|GO:0015934
Seca5g03241 167 Gene3D Ribosomal protein L14 48 167 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca5g03241 167 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 49 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03241 Seca-Chr5 88072801 88076150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03241 59 150 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 2.97e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03241 K02874 - gmx:100818301 294.664