Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03236 ATGGAAACTGAAAAGTCTAATATTTTGAAGGCTGAAGAACTTAAAACCCTTGCCAATGAAGCATTCAAGGCTCGGAAATATGCTCAAGCTATTGATCTATATACACAAGCAATTGAGCTAAATAATCAAAATGCAGTTTACTTGGCTAATCGTGCCTTTGCCCATATTCGGCTTGAGGAATATGGTAGTGCAATACTAGATGCCACAAAGGCTATTGAAATTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTCATCTTGGGCTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAACAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTTAAATTTGAGGAAGCTATTGCTGTACCAGAATCTCAAAGGCGTTCAATAGCTGAATCCATAGATTTCCATTCAATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGTGGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGTGGTGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAGCTGCAATTGTGGTTGGTTTGCTGTTGCTCCTTGGGGCATGTTGGTGGAGTGGCCGCAATACTGGTACATTTAGGAGTCATTTACATGACCTAGATGTGGAGCCACAATACTCAGGAGCAAGGTTAGAGGGGGATGTTGTTACTTTGGATTTTGTAAAGAAAATGATGGATGATTTCAAGAATCAGAAGTGCTTGCATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGCTGCAAGCTTTGCCTTCTCTTGTTGATATAACTGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTGCATGGCCAGTACTATGATCTTTTAAATATATTTGAGCTCAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGATTTTGTGGATAGAGGATCTTTTTCTTTGGAAGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATCTAGCTAGAGGAAATCACGAGAGCAAGAGCATGAACAAAATATATGGTTTTGAGGGTGAAGTGCGTTCAAAGTTGAGTGAAACATTTGTTGAACTATTTGCGGAAGTATTCTGCTGTTTACCTTTGGCTCATGTGATAAATGAGAAAATTTTTGTAGTCCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGACATCCGATCAATTAATCGGTTTTGCGAACCTCCTGAAGAAGGGTTGATGTGTGAATTGCTATGGAGTGATCCACAACCTCTCCCTGGAAGAGGCCCAAGCAAGCGTGGTGTAGGCCTTTCTTTCGGTGCAGATGTGACAAAAAGGTTCTTGCAGGAAAATAATTTAGACTTAGTTGTGCGATCTCATGAAGTAAAGGATGAGGGGTATGAGATTGAACATGATGGTAAACTCATAACTGTGTTTTCTGCACCAAATTACTGTGACCAGATGGGCAACAAAGGTGCCTTTATTCGATTCGAAGCACCTGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGCCGCACCCTGATGTCAAGCCAATGGCTTATGCAAACAACTTCCTCCGAATGTTCTCATAA 1653 0.4077 METEKSNILKAEELKTLANEAFKARKYAQAIDLYTQAIELNNQNAVYLANRAFAHIRLEEYGSAILDATKAIEIDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAVPESQRRSIAESIDFHSIGKGRNSSVPTEVAIAAVTVAVMAVVVMLFRTSKTTIVAAIVVGLLLLLGACWWSGRNTGTFRSHLHDLDVEPQYSGARLEGDVVTLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLQALPSLVDITVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVINEKIFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03236 550 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Seca5g03236 550 SUPERFAMILY TPR-like 10 137 IPR011990 GO:0005515
Seca5g03236 550 FunFam Serine/threonine-protein phosphatase 5 210 549 - -
Seca5g03236 550 Pfam Tetratricopeptide repeat 17 78 - -
Seca5g03236 550 SUPERFAMILY Metallo-dependent phosphatases 237 544 IPR029052 -
Seca5g03236 550 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 543 - -
Seca5g03236 550 Gene3D Tetratricopeptide repeat domain 2 159 IPR011990 GO:0005515
Seca5g03236 550 PRINTS Serine/threonine phosphatase family signature 351 375 IPR006186 GO:0016787
Seca5g03236 550 PRINTS Serine/threonine phosphatase family signature 318 345 IPR006186 GO:0016787
Seca5g03236 550 PRINTS Serine/threonine phosphatase family signature 385 411 IPR006186 GO:0016787
Seca5g03236 550 PRINTS Serine/threonine phosphatase family signature 415 442 IPR006186 GO:0016787
Seca5g03236 550 PRINTS Serine/threonine phosphatase family signature 471 491 IPR006186 GO:0016787
Seca5g03236 550 PRINTS Serine/threonine phosphatase family signature 493 509 IPR006186 GO:0016787
Seca5g03236 550 PRINTS Serine/threonine phosphatase family signature 288 315 IPR006186 GO:0016787
Seca5g03236 550 SMART tpr_5 79 112 IPR019734 GO:0005515
Seca5g03236 550 SMART tpr_5 45 78 IPR019734 GO:0005515
Seca5g03236 550 SMART tpr_5 11 44 IPR019734 GO:0005515
Seca5g03236 550 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Seca5g03236 550 PIRSF PPPtase_5 1 550 - -
Seca5g03236 550 SMART pp2a_7 256 532 IPR006186 GO:0016787
Seca5g03236 550 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Seca5g03236 550 Pfam PPP5 TPR repeat region 219 280 IPR013235 -
Seca5g03236 550 Gene3D - 210 549 IPR029052 -
Seca5g03236 550 CDD MPP_PP5_C 228 543 IPR041753 -
Seca5g03236 550 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Seca5g03236 550 Pfam Calcineurin-like phosphoesterase 288 482 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03236 Seca-Chr5 87993870 88003691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03236 263 472 Calmodulin-binding Proteins AT5G63870 34.694 2.80e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03236 K04460 - gmx:100820099 993.801