Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03223 ATGCGCCACACACTCACCATTTACATCTACAAAGCAAAACACAACCCCGATTTCATAGAGAGGTTAAGGAACTCCCTTAGCAAGATTCTAGTGCACTATTATCCCATAGCTGGTCGAGTGTGTTGGACAGAAGGTGGCCGAATAGAATTTGATTGCAATGCAAAAGGAGCAATATTGCTTGAAGCTGAAACCACAAAAACATTGGGTGATTATGAAGACTTTTCACCCTCTGAGTCCACCAAAGAGCTTGTTCCAACAATCGATTACAATCAACCTATGGAGGACCTTCCTTTATTAGCAGTGCAACTCACAAGATTCCAAGGCAATGAAGGCCTTGCAATTGGAGTTGCTTTCTTCCATCCTTTGTCTGATGGGCTCGGAGCCATTCAATTCATCAACTCATGGGCAAAGATAGCTCGAGGAGACACACTAGAGCCCCATGAAATGCCCTTTCTTGATCGAACAATACTCAAATTTTCACACCCCCCTTTGGCACCACGCTTTGACCACACAGAGTTAAAGCCTCTGCCACTCATTCTAGGAAGATCTGATGCCACTGTTGAAAGGAATAAGAAGATAATTGTTGCATCTTTAAGACTCACAGCAGAGCAAGTGGAAAAGCTCAAGAAGAAGGCCAATGAACAAGCTCCAAAACAAGGGTCTAGACCTTATAGTAAATATGAAGTAATTGGGGCACATATATGGATATGTGCATCTAAGGCTCGTGAGCTTGATGAGAATCAACCAAGTGTTGTTCGGTTTCATGTTGATATTCGCAATAGAATGGTTCCACCTCTCCCTCAAAATTATTTTGGGAATGTCTTGGCACAAACAGAGGCAAGAGGTTATGTTGGAGATGTCACATTGAAACCATTGAGTTATGTTGCACAAAAGATAAGGGAAGCAACAAAGCAAGTAAGTGATGAGTATATAAGGTCTCAACTTGATGTTATTAGAGGACAAGAGCATTTGGATGATGCAAGGGCTTTATGCATAGAAGGTAAGAATGCCTCATTTTGTGGGAATCCTAATTTTCATCTTACAAGTTGGATGAGCATGCCGATGTATGAAGCAGATTTTGGGTGGGGAAAGCCTGTGTACTTCGGCCTAGCATATGTTGCCGCACATGATAGGGCCTTAATTCTTCTTAGCCCAGAAGGGGATGGCTCTGTTATTGTGTGTATGCACTTTCAGGTAGCACATATTCAACTTTTCAAGACATTATTCTATGATATATGA 1239 0.4189 MRHTLTIYIYKAKHNPDFIERLRNSLSKILVHYYPIAGRVCWTEGGRIEFDCNAKGAILLEAETTKTLGDYEDFSPSESTKELVPTIDYNQPMEDLPLLAVQLTRFQGNEGLAIGVAFFHPLSDGLGAIQFINSWAKIARGDTLEPHEMPFLDRTILKFSHPPLAPRFDHTELKPLPLILGRSDATVERNKKIIVASLRLTAEQVEKLKKKANEQAPKQGSRPYSKYEVIGAHIWICASKARELDENQPSVVRFHVDIRNRMVPPLPQNYFGNVLAQTEARGYVGDVTLKPLSYVAQKIREATKQVSDEYIRSQLDVIRGQEHLDDARALCIEGKNASFCGNPNFHLTSWMSMPMYEADFGWGKPVYFGLAYVAAHDRALILLSPEGDGSVIVCMHFQVAHIQLFKTLFYDI. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03223 412 Gene3D - 182 412 IPR023213 -
Seca5g03223 412 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 409 - -
Seca5g03223 412 Coils Coil 195 215 - -
Seca5g03223 412 Gene3D - 2 175 IPR023213 -
Seca5g03223 412 Pfam Transferase family 4 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03223 Seca-Chr5 87851109 87852347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03223 3 412 Monolignol Biosynthesis Gene Families AT5G48930 34.223 1.05e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03223 K13065 - gmx:100778626 565.074