Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03212 ATGGCAGATATTGTTATCTCCATTGTGGCTAAACTCACTGAATTTTTGGTAGAACGAGCAATGCGCAGGGCACAACACTTTCTTTGTGTTGGTAAAGTAATCAAAGATCTTGAGAATGAAAAGAAGGAGCTCACATCTGAAAGAGATAGCTTGCTTGGTCGAGTTGAACAAGCCAAGGAAAGAACTGAAGTAATTGAGGAACCTGTGGAAAAGTGGCTTTATGATGTGAATACTTTACTGGAAGAGGTCACAGATCTGGAGCAAAGGAATAGAACAAACACCAGTTGCTTTCAAGGAAAACATCGTTTATGCAAGCAAATGCTAAAGAAAATTGAGGCAATGAGGAATTTCAAAGGCAAAAGCAATGTTCAGCCATTTTGCCGTCGTGCTTCACTTCCAGGTATTCAGTATCAGTCATCCAAAAGATTTATTTATTTTGAATCAGCAAAATTGGCTTACAATCAACTTTTGGAGGCACTACAAGAGGATGACATGTTCATGATAGGAGTGTATGGAATGGGTGGATGTGGGAAAACAACTCTTGTGATAGAAATTGGTAAAAAACTTGAGGAGTTGAATTTGTTTGATAAGGTCATTTTAATTACAGTGTCTCAAACTCCAAACATTAAAGACATTCAAAGCAAAATGGCTGATATGTTGAACATGAAACTGGAGGAAGTATCTGAAGAAGGAAGAGCACAACGTTTATGGTTGAGTTTGAAAGAAAGGAAGCGGATTCTTATAATCATAGATGATTTATGGAGACAGTTTAATTTGGAGGATATAGGCATTCGCTTGGACAATGATTACAATGGCAAGGTCCTTATAACCACTCGTGATCAACATGTGTGTGATTCAATGGACTGTCAAAAGAAGATTCATTTGGAGCTTTTATCTAGAGATGAATCTTGGACTCTGTTCAAAAAGCGTGCAAATATTGATGATGGCTTCTCCAAGTCATTGGATGACGTGCCATTGAAAATTTGCTATGAATGTAGAGGACTACCTATTGCAATTGTAGCTGTGGGATCATCCTTAAAAGGAAAATCTATTGCTAATTGGAATGTAGCATTGAACAGCTTGAGGCTTTCTGAGGCTATTGATGATCATGTGGAAGAAGGAGTGAAAGCTGCTTTGAGTTGTCTTAAATTAAGCTATGATTATTTACAAAACAAAGAGGCACAATTGCTCTTCTTAATGTGTGCTATGTTTCCAGAAGACTATAGCATCTCAACAGAAGATTTGATCCGATATGCAGTTGGAGTGGGCCAAGGAGGAACATTTTCATTGGACTCAACAAGGGACATGATCGAAGCAAATTTAAGCAAACTATTAGGATCTTCATTGTTGATGCATGCTGAGGAAGGTAAAGACTATGTGAAAATGCATGACGTGGTTCGTGATGCAGCCTTATGGATATCAAAGAGATCAGAGAATCGCCAAATTTTGGTGAATCTTGACAAACCACGTAGCACATTGGCAGAGAATGATAGTGTTAGAAGTTGTTTTGCAGTGTCCTCATGGTATAAGGAAAACCAAGTATTTCATCAGTTGCATGCTCCCCACCTTGAAATTCTATTGCTACATACTGATGTTAAGGTTTCCTTGAATTTATCACATGCAACATTTGAAGGAATAGAAGGGCTCAAGGTATTTTCTCTAAACAATTCATTCCTTCATAAACAATCACTTTTGTTGCCTCAATCAACCCAGTTGTTGGCAAATCTTCGAACTCTGCGCTTGAACCGATGGCAGTTGGGTGACATTTCTTTCATAACAAGTTTAGCAAGACTTGAGGTTCTTGACTTGCGAGATTCTAGCTTCAATGAACTTCCTAGAGAAATAGAAAAGCTGAAAAGATTGAAGCTACTAGATTTGTCACGTTGTGATATTCTTCAAGAAAATTATAATGAAGTAATAGGGAAATGTTCACAGCTTGAAGAATTATATATTTCAGGATGGCATCTAGCAAAATACATCTCTCAAAGTATTGTGGATATTAGTAGTCTCCCAAAGCTGCAAAGGTTTGTAATATATGCTGGTCAGATCAATGCACCATATCATGTGAAAAGACTTCTAGAAGTTGTGGATTTCAATATCTCCAGCTTGAGAGCATGTAATAAGAATATTCTCCAAATAGCTGAGATTGTTCGTTTCGAAAGCCTTTATGGAGGATGTAAAAACATCATCCCAGACATGGTTGGAGTTGTGGGAGGTATGAATGGTTTAACTAATCTCATTCTTCATGATTGCCAAGAGATACAAAGCATCTTCAATACAACCTTTAATTCTGATCATGTTGTCTCAATTAAGGTTGATACTACAATTCCCAGGTTAGTCAAGTTAGAGTTGTTGCATTTGAATAACTTGAAAGAATTGTGTCAAGGTCCACCTCAGCAAGTGCTACCATTCTTTGAGAAATTAGAAACACTATGTATAAGGTATTGCCCGAAGTTGCACAACATATTTCCACAGGAATGTAACTTACGAAATCTTAATACCCTCATAATAGAAAATCATGATTGGGATGACAACTGCACATCAGGTGAAGTACTCTTCTCGATGTGTGTTGCTCAAAGTCTACAACAGCTAAAAAAGCTAGTTATAATATGTTGCAAGGAATTGAAGCATATAATTGCAAGTGGAGGAGAGCATTTTGTGATGCCTAATTTGAAGACACTTCACATTTCTAAATGTAGGAAGTTAGAGTCGATATTCCCAATATGTTGTTTTGAAGGACTACCACGACTAGAAAACTTAACAATAGAAGAGGCTCCTAAGCTGAAATATGTATTTGGTGAATGTGATCACCAAGATCATTCATCTCACCAAAACCAAATCATGCCTCCACATTTGAAAAATATCGAACTCCATCGTCTTGAAAATCTAGTTGGGATATGTCCCAAAAGTATCATATAA 2919 0.372 MADIVISIVAKLTEFLVERAMRRAQHFLCVGKVIKDLENEKKELTSERDSLLGRVEQAKERTEVIEEPVEKWLYDVNTLLEEVTDLEQRNRTNTSCFQGKHRLCKQMLKKIEAMRNFKGKSNVQPFCRRASLPGIQYQSSKRFIYFESAKLAYNQLLEALQEDDMFMIGVYGMGGCGKTTLVIEIGKKLEELNLFDKVILITVSQTPNIKDIQSKMADMLNMKLEEVSEEGRAQRLWLSLKERKRILIIIDDLWRQFNLEDIGIRLDNDYNGKVLITTRDQHVCDSMDCQKKIHLELLSRDESWTLFKKRANIDDGFSKSLDDVPLKICYECRGLPIAIVAVGSSLKGKSIANWNVALNSLRLSEAIDDHVEEGVKAALSCLKLSYDYLQNKEAQLLFLMCAMFPEDYSISTEDLIRYAVGVGQGGTFSLDSTRDMIEANLSKLLGSSLLMHAEEGKDYVKMHDVVRDAALWISKRSENRQILVNLDKPRSTLAENDSVRSCFAVSSWYKENQVFHQLHAPHLEILLLHTDVKVSLNLSHATFEGIEGLKVFSLNNSFLHKQSLLLPQSTQLLANLRTLRLNRWQLGDISFITSLARLEVLDLRDSSFNELPREIEKLKRLKLLDLSRCDILQENYNEVIGKCSQLEELYISGWHLAKYISQSIVDISSLPKLQRFVIYAGQINAPYHVKRLLEVVDFNISSLRACNKNILQIAEIVRFESLYGGCKNIIPDMVGVVGGMNGLTNLILHDCQEIQSIFNTTFNSDHVVSIKVDTTIPRLVKLELLHLNNLKELCQGPPQQVLPFFEKLETLCIRYCPKLHNIFPQECNLRNLNTLIIENHDWDDNCTSGEVLFSMCVAQSLQQLKKLVIICCKELKHIIASGGEHFVMPNLKTLHISKCRKLESIFPICCFEGLPRLENLTIEEAPKLKYVFGECDHQDHSSHQNQIMPPHLKNIELHRLENLVGICPKSII. 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03212 972 SUPERFAMILY L domain-like 461 938 - -
Seca5g03212 972 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 845 932 - -
Seca5g03212 972 Coils Coil 34 61 - -
Seca5g03212 972 Gene3D - 385 471 IPR036388 -
Seca5g03212 972 Gene3D - 298 384 IPR042197 -
Seca5g03212 972 PRINTS Disease resistance protein signature 167 182 - -
Seca5g03212 972 PRINTS Disease resistance protein signature 332 346 - -
Seca5g03212 972 PRINTS Disease resistance protein signature 616 632 - -
Seca5g03212 972 PRINTS Disease resistance protein signature 240 254 - -
Seca5g03212 972 FunFam Probable disease resistance protein At1g61300 146 292 - -
Seca5g03212 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 401 IPR027417 -
Seca5g03212 972 Coils Coil 629 649 - -
Seca5g03212 972 Pfam NB-ARC domain 154 387 IPR002182 GO:0043531
Seca5g03212 972 Gene3D - 131 294 IPR027417 -
Seca5g03212 972 Gene3D Ribonuclease Inhibitor 510 965 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03212 Seca-Chr5 87674388 87677306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03212 153 819 WRKY Transcription Factor Family AT5G45050 23.184 1.70e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03212 - - aprc:113855292 1083.55