Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03208 ATGAGTTGCTTTCCATGTTGTACGTCACAAGAGAGGATCAACAAGAAGTCATTGAAGAATAGCATTAAGGAATACCATGAAGCAAAAACTCTAGCCTCATTTGCCAAAATCTCTTTTAAAACTGAAAGTGGCAAGAGAAGGTTCATAACAGATGAGATAGCAAAGCTTGGGAAAGGAAATATTACCTCTAAGATTTTTACTTACCGTGAGCTATGTGTTGCAACTGGGAACTTTCACCCTTCTAATATGATTGGTGAAGGAGGCTTTGGGAGGGTATACAAAGGACGCATTAAAGGCACATATCAAGATGTTGCTGTGAAGCAGCTAGACAGGAATGGATTTCAAGGAAACAGGGAATTTCTAGCAGAGGTTTTGATTTTGAGTCTTTTGCACCATCCTAACCTTGTCAATTTGGTAGGGTATTGTGCTGAAGGTGAACAAAGGGTTTTGGTATATGAATACATGGCCAATGGTTCTTTAGAAGATCACTTACTTGACTTAAATCAAGACGAAAAGCCCTTGGACTGGCAAACTAGAATGAAAATTGCAGAAGGTGCAGCAAAAGGACTTGAATATTTACATGAAGTAGCAAACCCACCAGTGATATATCGTGACTTCAAAGCATCAAACATACTGTTAGATGAAAACTTCAATCCAAAGCTTTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGAGATAACTCACATGTATCCACCAGAGTGATGGGAACTTATGGCTACTGTGCTCCTGAGTATGCATCAACAGGGCAGTTAACTTCAAAATCAGATGTGTACAGCTTTGGAGTAGTGTTTTTGGAAATGATCACAGGAAGAAGAGTCATTGACAATTCAAGGCCATCAGAACAACAAAATTTAGTCATTTGGGCACAACCACTTTTGAGAGACAGAAGGAAATTTACAATAATGGCAGATCCATTGCTAGAAGATAAATACCCCATAAAGGGTCTCTACCAAGCTTTAGCAGTAGCAGCAATGTGTCTCCAAGAAGAAGCTGATACCCGACCTTTGATCAGTGATGTAGTTACAGCTCTTGACTTTTTGGCAAGGAAGAAAGTAGAGGTGGATGAAATGCAACATTCAAAAGAGACTTCTCCTTCTTCTTCTCAGGATGGACATGACAGTGGAGACAATGAATCTAATGCAGTAAATGATGACGATGATGATGATGATGATGATGAAGATGATGATGATAATGATGATGATAAAGATGATGATGATAAGGATACTGATAAAAGAGGATAG 1266 0.3902 MSCFPCCTSQERINKKSLKNSIKEYHEAKTLASFAKISFKTESGKRRFITDEIAKLGKGNITSKIFTYRELCVATGNFHPSNMIGEGGFGRVYKGRIKGTYQDVAVKQLDRNGFQGNREFLAEVLILSLLHHPNLVNLVGYCAEGEQRVLVYEYMANGSLEDHLLDLNQDEKPLDWQTRMKIAEGAAKGLEYLHEVANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDNSHVSTRVMGTYGYCAPEYASTGQLTSKSDVYSFGVVFLEMITGRRVIDNSRPSEQQNLVIWAQPLLRDRRKFTIMADPLLEDKYPIKGLYQALAVAAMCLQEEADTRPLISDVVTALDFLARKKVEVDEMQHSKETSPSSSQDGHDSGDNESNAVNDDDDDDDDDEDDDDNDDDKDDDDKDTDKRG. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03208 421 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Seca5g03208 421 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03208 421 MobiDBLite consensus disorder prediction 369 384 - -
Seca5g03208 421 CDD STKc_IRAK 84 353 - -
Seca5g03208 421 Gene3D Phosphorylase Kinase; domain 1 51 154 - -
Seca5g03208 421 FunFam Serine/threonine-protein kinase PBS1 155 371 - -
Seca5g03208 421 Pfam Protein kinase domain 79 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03208 421 SUPERFAMILY Protein kinase-like (PK-like) 64 369 IPR011009 -
Seca5g03208 421 MobiDBLite consensus disorder prediction 363 421 - -
Seca5g03208 421 Gene3D Transferase(Phosphotransferase) domain 1 155 379 - -
Seca5g03208 421 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Seca5g03208 421 MobiDBLite consensus disorder prediction 388 412 - -
Seca5g03208 421 PANTHER OS07G0668900 PROTEIN 3 364 - -
Seca5g03208 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03208 Seca-Chr5 87612063 87614584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03208 60 356 Glycoside Hydrolase AT3G07070 70.370 4.44e-157 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca5g03208 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03208 - - gmx:100790474 674.085