Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03197 ATGAGTGTGGTGGGGTTTGACATTGGCAATGAAAACTGTGTCATTGCTGTGGCAAAGCAACGTGGGATTGATGTTTTGTTGAATGATGAGTCTAAACGGGAAACCCCTGCTGTGGTCTGCTTTGGCGAGAAGCAACGGTTTTTGGGGTCTGCTGGTGCTTCATCTGCTATGATGCACCCCAAGACCACAATATCTCAAATAAAGAGACTGATAGGCAGGAAATTTGCAGACCCTGATGTGGAAAAAGAGCTGAAAATGCTCCCTGTTGAAACTTCTGAAGGCTCAGATGGTGGCATTTTGATTCACTTGAAATACTTGGAGGAGACTCATACATTTACCCCTGTTCAAATAATGTCAATGCTCTTTGCTCACTTGAAGACTATGACAGAAAAAGATTTGGAGACACCCATTTCAGATTGTGTTATTGGGGTCCCATCATACTTTACTGACTTGCAGAGACGGGCATATCTTGATGCAGCAAAAATTGCTGGGTTGAAGCCTTTGAGATTGATCCATGATTGTACTGCAACTGCCCTTAGTTATGGAATTTACAAAACAAGTTTTCACAGTGAAGGTTCAATTTGTGTTGCAATTATTGACATTGGTCACTGTGATACTCAGGTCTCAATTGCTGCATTTGAGTTTGGGCAAATGAAGATACTTTCGCATGCTTTTGACAGATGCTTAGGGGGGAGGGACTTTGATGAGGTTCTATTTAGTCATTTTGCAGCCAAATTTAAGGAACAGTACAGCATTGATGTGTATTCTAATGCCAAGGCATGTATTAGGCTTCGTGCAGCATGCGAGAAATTGAAGAAAGTTTTAAGTGCAAATCTAGAGGCACCTCTAAATATTGAGTGTTTGATGGATGAGAAAGATGTTAAGGGATTTATCACAAGGGAAGAATTTGAAAAGCTGGCATCGGGATTATTGGAGAGAATTTCCATTCCTTGCAACAAAGCATTAAGAGATGCAGGCTTGACTGCAGAGAAGATTTCTTCTATAGAGCTTGTTGGTTCAGGTTCTAGGATTCCAGCTATAAGTACAATATTAACTTCTCTATTCAAGAGAGAACCCAGCCGAAAGCTGAATGCAAGTGAGTGTGTAGCTCGTGGCTGTGCTCTACAATGTGCAATGCTCAGTCCTGTATACCGTGTGAGAGAATATGAGGTCCAGGATGTTATTCCTTTTTCAATTGGACTTTCATCGGATGAAGGTCCAATTTCTGCAGGATCTGATGGTGTACTTTTCCCAAAAGGCCAACCCATTCCAAGTGTTATAGTCCTAACATTTCATCGAACTAATCTGTTCCATTTGGAAGCCATCTATGCTAATCCAAATGAACTACCACCTGGGACATCTCCTAAAATTAGTTGCTTCACGGTATGCCCACTTTAG 1398 0.4149 MSVVGFDIGNENCVIAVAKQRGIDVLLNDESKRETPAVVCFGEKQRFLGSAGASSAMMHPKTTISQIKRLIGRKFADPDVEKELKMLPVETSEGSDGGILIHLKYLEETHTFTPVQIMSMLFAHLKTMTEKDLETPISDCVIGVPSYFTDLQRRAYLDAAKIAGLKPLRLIHDCTATALSYGIYKTSFHSEGSICVAIIDIGHCDTQVSIAAFEFGQMKILSHAFDRCLGGRDFDEVLFSHFAAKFKEQYSIDVYSNAKACIRLRAACEKLKKVLSANLEAPLNIECLMDEKDVKGFITREEFEKLASGLLERISIPCNKALRDAGLTAEKISSIELVGSGSRIPAISTILTSLFKREPSRKLNASECVARGCALQCAMLSPVYRVREYEVQDVIPFSIGLSSDEGPISAGSDGVLFPKGQPIPSVIVLTFHRTNLFHLEAIYANPNELPPGTSPKISCFTVCPL. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03197 465 Gene3D Actin; Chain A, domain 4 230 313 - -
Seca5g03197 465 FunFam Heat shock 70 kDa protein 4 38 113 - -
Seca5g03197 465 FunFam Heat shock 70 kDa protein 4 102 197 - -
Seca5g03197 465 Gene3D - 38 113 - -
Seca5g03197 465 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Seca5g03197 465 PRINTS 70kDa heat shock protein signature 2 15 - -
Seca5g03197 465 PRINTS 70kDa heat shock protein signature 363 383 - -
Seca5g03197 465 PRINTS 70kDa heat shock protein signature 140 160 - -
Seca5g03197 465 PRINTS 70kDa heat shock protein signature 388 407 - -
Seca5g03197 465 PRINTS 70kDa heat shock protein signature 332 348 - -
Seca5g03197 465 PRINTS 70kDa heat shock protein signature 30 42 - -
Seca5g03197 465 Pfam Hsp70 protein 3 450 IPR013126 GO:0005524|GO:0140662
Seca5g03197 465 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 465 IPR029047 -
Seca5g03197 465 Gene3D - 186 360 - -
Seca5g03197 465 PANTHER HSC70CB, ISOFORM G-RELATED 1 462 - -
Seca5g03197 465 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Seca5g03197 465 Gene3D - 5 374 - -
Seca5g03197 465 CDD HSPA4_like_NDB 2 381 - -
Seca5g03197 465 FunFam Heat shock 70 kDa protein 4 230 313 - -
Seca5g03197 465 FunFam Heat shock 70 kDa protein 4 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03197 Seca-Chr5 87504407 87507114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03197 4 424 Calmodulin-binding Proteins AT1G16030 33.726 1.41e-79 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03197 K09489 - gmx:100808218 805.438